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Report for CCDS27989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27989.1 Public Mus musculus 16 Vpreb1a 23 108 98 CCDS HistoryNCBI Gene:22362Re-query CCDS DB by CCDS ID:27989.1Re-query CCDS DB by GeneID:22362See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075017.4 ENSMUSP00000074537.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075017.4Link to Ensembl Protein Viewer:ENSMUSP00000074537.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075017Re-query CCDS DB by Protein ID:ENSMUSP00000074537
Original member Current member NCBI NM_016982.2 NP_058678.1 Accepted alive Link to Nucleotide Sequence:NM_016982.2Link to Protein Sequence:NP_058678.1Re-query CCDS DB by Nucleotide ID:NM_016982Re-query CCDS DB by Protein ID:NP_058678Link to BLAST:NP_058678.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058678.1 142 P13372 142 100% 0 0

Chromosomal Locations for CCDS 27989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 16868596 16868978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16869066 16869111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGCCTGGACGTCTGTCCTGCTCATGCTGCTGGCCTATCTCACAGGTTGTGGCCCTCAGCCCATGGTGC
ATCAGCCACCATTAGCATCTTCTTCCCTTGGAGCCACCATCCGCCTCTCCTGTACCCTGAGCAACGACCA
TAACATTGGCATTTACAGCATTTACTGGTACCAGCAGAGGCCGGGCCACCCTCCCAGGTTCCTGCTGAGA
TACTTCTCACACTCAGACAAGCACCAGGGTCCCGATATCCCACCTCGCTTCTCCGGGTCCAAAGATACGA
CCAGGAACCTGGGGTATCTGAGCATCTCTGAACTGCAGCCTGAGGACGAGGCTGTGTATTACTGTGCCGT
GGGGCTCCGGAGCCAGGAAAAGAAGAGGATGGAGAGGGAGTGGGAAGGAGAAAAGTCGTATACAGATTTG
GGATCTTAG

Translation (142 aa):
MAWTSVLLMLLAYLTGCGPQPMVHQPPLASSSLGATIRLSCTLSNDHNIGIYSIYWYQQRPGHPPRFLLR
YFSHSDKHQGPDIPPRFSGSKDTTRNLGYLSISELQPEDEAVYYCAVGLRSQEKKRMEREWEGEKSYTDL
GS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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