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Report for CCDS27702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27702.1 Public Mus musculus 15 Ttll1 23 108 98 CCDS HistoryNCBI Gene:319953Re-query CCDS DB by CCDS ID:27702.1Re-query CCDS DB by GeneID:319953See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27702.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016897.11 ENSMUSP00000016897.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016897.11Link to Ensembl Protein Viewer:ENSMUSP00000016897.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000016897Re-query CCDS DB by Protein ID:ENSMUSP00000016897
Original member Current member EBI ENSMUST00000109480.7 ENSMUSP00000105106.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109480.7Link to Ensembl Protein Viewer:ENSMUSP00000105106.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109480Re-query CCDS DB by Protein ID:ENSMUSP00000105106
Original member Current member NCBI NM_001357953.1 NP_001344882.1 Accepted alive Link to Nucleotide Sequence:NM_001357953.1Link to Protein Sequence:NP_001344882.1Re-query CCDS DB by Nucleotide ID:NM_001357953Re-query CCDS DB by Protein ID:NP_001344882Link to BLAST:NP_001344882.1
Original member Current member NCBI NM_178869.4 NP_849200.2 Accepted alive Link to Nucleotide Sequence:NM_178869.4Link to Protein Sequence:NP_849200.2Re-query CCDS DB by Nucleotide ID:NM_178869Re-query CCDS DB by Protein ID:NP_849200Link to BLAST:NP_849200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344882.1 423 Q91V51 423 100% 0 0
NP_849200.2 423 Q91V51 423 100% 0 0

Chromosomal Locations for CCDS 27702.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83484184 83484313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83489469 83489632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83492543 83492629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83496272 83496415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83497320 83497428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83498152 83498286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83499922 83500102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83502081 83502289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83505250 83505362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGCGGGAAGGGTGAAGTGGGTCACTGACATTGAGAAGTCGGTACTAATCAACAACTTCGAGAAGAGAG
GGTGGATCCAAGTGACAGAAAATGAAGACTGGAATTTTTACTGGATGAGCGTGCAAACCATTCGCAACGT
GTTCAGCGTAGAAACTGGGTACCGGCTGTCAGACGACCAGATCGTCAACCATTTCCCCAACCACTACGAG
CTGACCCGCAAGGACCTGATGGTGAAGAACATTAAGAGATACAGGAAGGAGCTGGAGAAGGAAGGAAGTC
CCTTGGCGGAGAAAGACGAGAATGGAAAATACCTCTATCTGGACTTTGTCCCCGTCACCTACATGCTCCC
CGCCGACTACAACCTGTTTGTGGAAGAGTTCCGGAAGAGCCCGTCCAGCACCTGGATCATGAAGCCATGT
GGCAAAGCACAGGGAAAAGGCATCTTCCTCATCAATAAGCTTTCGCAGATCAAAAAGTGGTCCCGGGACA
GCAAGACGTCCTCGTTTGTGTCGCAGTCCACAAAAGAAGCGTACGTGATCTCAGTCTATATCAATAATCC
GTTGCTCATCGGTGGAAGGAAGTTTGACCTTCGTCTGTATGTCCTGGTGTCCACGTACCGCCCGCTGCGC
TGCTACATGTACAAGCTTGGGTTCTGCCGCTTCTGCACAGTGAAGTACACCCCTAGTACCAGTGAGCTCG
ACAACATGTTTGTCCACCTTACCAACGTGGCCATCCAGAAGCATGGGGAGGACTACAACCACATCCACGG
TGGCAAGTGGACTGTCAACAACCTGCGTCTCTACCTGGAGAGCACCCGAGGCCGAGAGGTGACCAGCAAG
CTGTTTGATGAAATCCACTGGATCATCGTGCAGTCTCTCAAGGCCGTGGCGCCAGTGATGAACAACGACA
AACACTGCTTTGAATGCTACGGCTACGACATCATCATCGATGACAAGCTGAAGCCCTGGCTGATCGAGGT
CAACGCGTCCCCGTCTCTCACATCCAGCACCGCCAACGATCGAATCCTTAAGTACAACCTGATTAACGAC
ACCCTCAACATTGCGGTCCCCAACGGCGAGATTCCCGACTGCAAGTGGAACAAGTCTCCCCCCAAGGAAG
TACTTGGCAACTATGAGATCCTGTATGACGAGGAGCTGGCCCAGGGTGACGGGGCTGAACGAGAGCTTAG
AAACCGCCCAGGCCAGCCAGTGGGGCCCAGAGCAGGCCGCTCGAGAGACTCAGGAAGAAGTGTCCTCACA
ACCTGGAAGTGA

Translation (423 aa):
MAGRVKWVTDIEKSVLINNFEKRGWIQVTENEDWNFYWMSVQTIRNVFSVETGYRLSDDQIVNHFPNHYE
LTRKDLMVKNIKRYRKELEKEGSPLAEKDENGKYLYLDFVPVTYMLPADYNLFVEEFRKSPSSTWIMKPC
GKAQGKGIFLINKLSQIKKWSRDSKTSSFVSQSTKEAYVISVYINNPLLIGGRKFDLRLYVLVSTYRPLR
CYMYKLGFCRFCTVKYTPSTSELDNMFVHLTNVAIQKHGEDYNHIHGGKWTVNNLRLYLESTRGREVTSK
LFDEIHWIIVQSLKAVAPVMNNDKHCFECYGYDIIIDDKLKPWLIEVNASPSLTSSTANDRILKYNLIND
TLNIAVPNGEIPDCKWNKSPPKEVLGNYEILYDEELAQGDGAERELRNRPGQPVGPRAGRSRDSGRSVLT
TWK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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