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Report for CCDS50065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50065.1 Public Mus musculus 17 Or10h1 23 108 98 CCDS HistoryNCBI Gene:100038860Re-query CCDS DB by CCDS ID:50065.1Re-query CCDS DB by GeneID:100038860See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112165.3 ENSMUSP00000129451.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112165.3Link to Ensembl Protein Viewer:ENSMUSP00000129451.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112165Re-query CCDS DB by Protein ID:ENSMUSP00000129451
Original member Current member EBI ENSMUST00000214406.1 ENSMUSP00000150882.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214406.1Link to Ensembl Protein Viewer:ENSMUSP00000150882.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214406Re-query CCDS DB by Protein ID:ENSMUSP00000150882
Original member Current member NCBI NM_207175.2 NP_997058.2 Accepted alive Link to Nucleotide Sequence:NM_207175.2Link to Protein Sequence:NP_997058.2Re-query CCDS DB by Nucleotide ID:NM_207175Re-query CCDS DB by Protein ID:NP_997058Link to BLAST:NP_997058.2

Chromosomal Locations for CCDS 50065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33199062 33200009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGTTGGGGCTAAATTACACCTTTGTGTCAGAGTTCATCCTCATTGGCTTCTCTACCTTCCCTCATCTTC
AGCTGATGTTCTTCCTGCTGTTCCTGCTCATGTACCTCTTCACACTGCTAGGCAACCTGCTCATCATGAC
CACCATCTGGAGTGAACACAGTCTCCACACACCCATGTACCTCTTCCTGTGTGCCCTCTCCATCTCTGAG
ATTTTCTACACCTTTGCCATCATCCCACGCATGTTGGCTGACCTGCTCTCCACACTTCACTCCATCGCCT
TTCTGGCCTGTGCCAGCCAGATGTTCTTCTCCTTCACATTTGGCTTCACCCATTCCTTTCTACTAACCGT
CATGGGTTATGACCGCTACGTGGCCATCTGTCACCCACTGAGATACAATGTGCTCATGAGCCCCCGTGGT
TGTGCCTGCCTGGTAACCTGGTCCTGGGTTGGTGGATCATTCATGGGGACAGTGGTGACGACAGCCATTT
TCAACCTCACCTTCTGTGGACCCAATGAGATCCACCATTTTGCTTGTCATGTTCCACCTCTATTGAAGTT
GGCATGCGGAGAGAATGTACTGGAGGTGGCAAAGGGTGTAGGAATAGTGTGCATCACAGCCCTCCTGGGC
TGCTTTCTCCTCATCCTCCTCTCATATGCCTTCATTGTGGTTACCATCTTGAAGATACCATCAGCTGAGG
GTCGGCACAAGGCTTTCTCCACATGTGCATCCCACCTCACAGTGGTGGTTGTACATTATGGCTTTGCTTC
TGTCATTTACCTCAAGCCTAAGGGCCCCAAGTCTCTGGAAGGAGATACTCTGATGGGCATCACCTACACA
GTCCTCACCCCCTTCCTTAGTCCCATCATCTTCAGTCTCAGGAACAAGGAGCTAAAGAATGCCATGAAGA
AGATCTTCCTAAGTAAACTCTATCCAGAGAAAATTTAA

Translation (315 aa):
MLGLNYTFVSEFILIGFSTFPHLQLMFFLLFLLMYLFTLLGNLLIMTTIWSEHSLHTPMYLFLCALSISE
IFYTFAIIPRMLADLLSTLHSIAFLACASQMFFSFTFGFTHSFLLTVMGYDRYVAICHPLRYNVLMSPRG
CACLVTWSWVGGSFMGTVVTTAIFNLTFCGPNEIHHFACHVPPLLKLACGENVLEVAKGVGIVCITALLG
CFLLILLSYAFIVVTILKIPSAEGRHKAFSTCASHLTVVVVHYGFASVIYLKPKGPKSLEGDTLMGITYT
VLTPFLSPIIFSLRNKELKNAMKKIFLSKLYPEKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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