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Report for CCDS38891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38891.1 Public Mus musculus 4 Zcchc17 23 108 98 CCDS HistoryNCBI Gene:619605Re-query CCDS DB by CCDS ID:38891.1Re-query CCDS DB by GeneID:619605See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000134159.2 ENSMUSP00000120807.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134159.2Link to Ensembl Protein Viewer:ENSMUSP00000120807.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000134159Re-query CCDS DB by Protein ID:ENSMUSP00000120807
Original member Current member NCBI NM_153160.5 NP_694800.1 Accepted alive Link to Nucleotide Sequence:NM_153160.5Link to Protein Sequence:NP_694800.1Re-query CCDS DB by Nucleotide ID:NM_153160Re-query CCDS DB by Protein ID:NP_694800Link to BLAST:NP_694800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694800.1 241 Q9ESX4-1 241 100% 0 0

Chromosomal Locations for CCDS 38891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 130316647 130316808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130327193 130327338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130329574 130329674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130337078 130337169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130338484 130338584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130349265 130349322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130354136 130354201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGAATTCAGGAAGGCCTGAGACCATGGAGAACTTGCCTGCACTGTATACTATTTTTCAAGGAGAGGTTG
CTATGGTGACAGACTATGGAGCTTTTATCAAAATCCCAGGCTGTCGGAAGCAAGGTCTGGTCCATCGAAC
TCACATGTCGTCCTGTCGAGTGGATAAGCCTTCTGAGATAGTAGATGTTGGAGACAAAGTGTGGGTGAAG
CTGATTGGCCGAGAGATGAAAAATGATAGAATAAAAGTGTCCCTCTCCATGAAAGTTGTCAACCAAGGAA
CTGGGAAAGACCTCGATCCCAACAACGTTGTCATTGAGCAAGAAGAGAGGCGCAGACGGTCCTTCCAGGA
TTACACTGGGCAGAAGATCACCCTTGAGGCCGTCCTGAACACGACCTGCAAGAAGTGTGGCTGCAAAGGC
CACTTTGCCAAGGACTGTTTCATGCAGCCAGGTGGAACCAAGTATTCTCTGATCCCTGAAGAGGAAGAGG
AAAAAGAGGAGGCAAAGGCAGAAGGACTTGAGAAGCCTGATCCCACGAAGAATTCTTCCAGGAAGAGAAA
GAAGGAAAAGAAGAAAAAGAAACATAGAGACAGGAAGTCATCTGACTGTGATAGCTCTGACTCTGAGAGT
GACACGGGCAAGAAGGCGAGGCATTCATCAAAAGACAGCAAGGCCACCAAGAAGAAAAAGAAGAAGAAGA
AGCACAAGAAGAAGCACAAGGAATGA

Translation (241 aa):
MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVK
LIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVVIEQEERRRRSFQDYTGQKITLEAVLNTTCKKCGCKG
HFAKDCFMQPGGTKYSLIPEEEEEKEEAKAEGLEKPDPTKNSSRKRKKEKKKKKHRDRKSSDCDSSDSES
DTGKKARHSSKDSKATKKKKKKKKHKKKHKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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