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Report for CCDS19162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19162.1 Public Mus musculus 5 Cenpa 23 108 98 CCDS HistoryNCBI Gene:12615Re-query CCDS DB by CCDS ID:19162.1Re-query CCDS DB by GeneID:12615See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19162.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000144742.5 ENSMUSP00000122831.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144742.5Link to Ensembl Protein Viewer:ENSMUSP00000122831.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144742Re-query CCDS DB by Protein ID:ENSMUSP00000122831
Original member Current member NCBI NM_007681.3 NP_031707.1 Accepted alive Link to Nucleotide Sequence:NM_007681.3Link to Protein Sequence:NP_031707.1Re-query CCDS DB by Nucleotide ID:NM_007681Re-query CCDS DB by Protein ID:NP_031707Link to BLAST:NP_031707.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031707.1 134 O35216 134 100% 0 0

Chromosomal Locations for CCDS 19162.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30667029 30667113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30672464 30672570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30672982 30673059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30673293 30673427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGGCCCGCGTCGCAAACCGCAGACCCCAAGGAGGAGACCCTCCAGCCCGGCGCCTGGACCCTCGCGAC
AGAGCTCCAGTGTAGGCTCTCAGACACTGCGCAGAAGACAGAAATTCATGTGGCTTAAGGAAATCAAGAC
CCTGCAGAAGAGCACAGACCTCTTGTTCAGGAAGAAGCCTTTCAGCATGGTTGTTAGAGAAATATGTGAG
AAGTTCAGCCGTGGTGTGGATTTTTGGTGGCAAGCCCAGGCCTTGTTGGCCCTTCAGGAGGCAGCAGAAG
CTTTCCTCATCCACCTCTTTGAGGACGCCTACCTCCTCTCCTTACATGCTGGTCGGGTCACGCTTTTCCC
CAAAGACATTCAGTTGACCAGGAGAATCCGAGGCTTCGAGGGCGGACTCCCCTAA

Translation (134 aa):
MGPRRKPQTPRRRPSSPAPGPSRQSSSVGSQTLRRRQKFMWLKEIKTLQKSTDLLFRKKPFSMVVREICE
KFSRGVDFWWQAQALLALQEAAEAFLIHLFEDAYLLSLHAGRVTLFPKDIQLTRRIRGFEGGLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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