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Report for CCDS19100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19100.1 Public Mus musculus 5 Cd36 23 108 98 CCDS HistoryNCBI Gene:12491Re-query CCDS DB by CCDS ID:19100.1Re-query CCDS DB by GeneID:12491See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082367.12 ENSMUSP00000080974.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082367.12Link to Ensembl Protein Viewer:ENSMUSP00000080974.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000082367Re-query CCDS DB by Protein ID:ENSMUSP00000080974
Original member Current member EBI ENSMUST00000165232.7 ENSMUSP00000126300.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165232.7Link to Ensembl Protein Viewer:ENSMUSP00000126300.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165232Re-query CCDS DB by Protein ID:ENSMUSP00000126300
Original member Current member EBI ENSMUST00000169095.5 ENSMUSP00000131832.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169095.5Link to Ensembl Protein Viewer:ENSMUSP00000131832.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169095Re-query CCDS DB by Protein ID:ENSMUSP00000131832
Original member Current member EBI ENSMUST00000170051.7 ENSMUSP00000133008.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170051.7Link to Ensembl Protein Viewer:ENSMUSP00000133008.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170051Re-query CCDS DB by Protein ID:ENSMUSP00000133008
Original member Current member EBI ENSMUST00000197890.4 ENSMUSP00000143061.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197890.4Link to Ensembl Protein Viewer:ENSMUSP00000143061.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197890Re-query CCDS DB by Protein ID:ENSMUSP00000143061
Original member NCBI NM_001159555.1 NP_001153027.1 Updated not alive Link to Nucleotide Sequence:NM_001159555.1Link to Protein Sequence:NP_001153027.1Re-query CCDS DB by Nucleotide ID:NM_001159555Re-query CCDS DB by Protein ID:NP_001153027
Current member NCBI NM_001159555.2 NP_001153027.1 Accepted alive Link to Nucleotide Sequence:NM_001159555.2Link to Protein Sequence:NP_001153027.1Re-query CCDS DB by Nucleotide ID:NM_001159555Re-query CCDS DB by Protein ID:NP_001153027Link to BLAST:NP_001153027.1
Original member NCBI NM_001159556.1 NP_001153028.1 Updated not alive Link to Nucleotide Sequence:NM_001159556.1Link to Protein Sequence:NP_001153028.1Re-query CCDS DB by Nucleotide ID:NM_001159556Re-query CCDS DB by Protein ID:NP_001153028
Current member NCBI NM_001159556.2 NP_001153028.1 Accepted alive Link to Nucleotide Sequence:NM_001159556.2Link to Protein Sequence:NP_001153028.1Re-query CCDS DB by Nucleotide ID:NM_001159556Re-query CCDS DB by Protein ID:NP_001153028Link to BLAST:NP_001153028.1
Original member NCBI NM_001159557.1 NP_001153029.1 Updated not alive Link to Nucleotide Sequence:NM_001159557.1Link to Protein Sequence:NP_001153029.1Re-query CCDS DB by Nucleotide ID:NM_001159557Re-query CCDS DB by Protein ID:NP_001153029
Current member NCBI NM_001159557.2 NP_001153029.1 Accepted alive Link to Nucleotide Sequence:NM_001159557.2Link to Protein Sequence:NP_001153029.1Re-query CCDS DB by Nucleotide ID:NM_001159557Re-query CCDS DB by Protein ID:NP_001153029Link to BLAST:NP_001153029.1
Original member NCBI NM_001159558.1 NP_001153030.1 Updated not alive Link to Nucleotide Sequence:NM_001159558.1Link to Protein Sequence:NP_001153030.1Re-query CCDS DB by Nucleotide ID:NM_001159558Re-query CCDS DB by Protein ID:NP_001153030
Current member NCBI NM_001159558.2 NP_001153030.1 Accepted alive Link to Nucleotide Sequence:NM_001159558.2Link to Protein Sequence:NP_001153030.1Re-query CCDS DB by Nucleotide ID:NM_001159558Re-query CCDS DB by Protein ID:NP_001153030Link to BLAST:NP_001153030.1
Original member NCBI NM_007643.4 NP_031669.3 Updated not alive Link to Nucleotide Sequence:NM_007643.4Link to Protein Sequence:NP_031669.3Re-query CCDS DB by Nucleotide ID:NM_007643Re-query CCDS DB by Protein ID:NP_031669
Current member NCBI NM_007643.5 NP_031669.3 Accepted alive Link to Nucleotide Sequence:NM_007643.5Link to Protein Sequence:NP_031669.3Re-query CCDS DB by Nucleotide ID:NM_007643Re-query CCDS DB by Protein ID:NP_031669Link to BLAST:NP_031669.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153027.1 472 Q08857 472 100% 0 0
NP_001153028.1 472 Q08857 472 100% 0 0
NP_001153029.1 472 Q08857 472 100% 0 0
NP_001153030.1 472 Q08857 472 100% 0 0
NP_031669.3 472 Q08857 472 100% 0 0

Chromosomal Locations for CCDS 19100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 17785722 17785886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17787686 17787740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17788252 17788325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17795579 17795697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17796996 17797183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17798229 17798298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17811181 17811227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17813013 17813104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17814113 17814292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17814673 17814820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17820440 17820600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 17828775 17828894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGGCTGTGATCGGAACTGTGGGCTCATTGCTGGAGCTGTTATTGGTGCAGTCCTGGCTGTGTTTGGAG
GCATTCTCATGCCAGTCGGAGACATGCTTATTGAGAAGACAATCAAAAGGGAAGTTGTCCTTGAAGAAGG
AACCACTGCTTTCAAAAACTGGGTTAAAACAGGCACCACTGTGTACAGACAGTTTTGGATCTTTGATGTG
CAAAACCCAGATGACGTGGCAAAGAACAGCAGCAAAATCAAGGTTAAACAAAGAGGTCCTTACACATACA
GAGTTCGTTATCTAGCCAAGGAAAATATAACTCAGGACCCCGAGGACCACACTGTGTCTTTTGTACAGCC
CAATGGAGCCATCTTTGAGCCTTCACTGTCTGTTGGAACAGAGGATGACAACTTCACAGTTCTGAATCTG
GCTGTAGCAGCTGCACCACATATCTACCAAAATTCATTTGTTCAAGTTGTGCTCAACTCTCTTATAAAAA
AGTCCAAGTCTTCTATGTTCCAAACAAGATCTTTGAAAGAACTCTTGTGGGGTTACAAAGATCCATTCCT
CAGTTTGGTTCCATATCCTATAAGTACCACAGTTGGTGTGTTTTATCCTTACAATGACACTGTAGATGGA
GTTTATAAAGTTTTCAATGGAAAGGATAACATAAGCAAAGTTGCCATAATTGAGTCCTATAAAGGGAAAA
GGAATTTGTCCTATTGGCCAAGCTATTGCGACATGATTAATGGCACAGACGCAGCCTCCTTTCCACCTTT
TGTTGAAAAGTCTCGGACATTGAGATTCTTTTCCTCTGACATTTGCAGGTCTATCTACGCTGTGTTCGGA
TCTGAAATCGACCTTAAAGGAATCCCCGTGTACAGATTTGTTCTTCCAGCCAATGCCTTTGCATCACCCC
TCCAGAATCCAGACAACCATTGTTTCTGCACTGAAAAAGTAATCTCCAATAACTGTACATCTTATGGTGT
GCTAGACATTGGCAAATGCAAAGAAGGAAAGCCTGTGTATATTTCGCTTCCACATTTCCTACATGCAAGT
CCAGATGTTTCAGAACCTATTGAAGGCTTACATCCAAATGAAGATGAGCATAGGACATACTTAGATGTGG
AACCCATAACTGGATTCACTCTACAATTTGCAAAACGACTGCAGGTCAACATATTGGTCAAGCCAGCTAG
AAAAATAGAAGCATTAAAGAATCTGAAGAGACCTTACATTGTACCTATACTGTGGCTAAATGAGACTGGG
ACCATTGGTGATGAAAAAGCAGAAATGTTCAAAACACAAGTGACTGGGAAAATCAAGCTCCTTGGCATGG
TAGAGATGGCCTTACTTGGGATTGGAGTGGTGATGTTTGTTGCTTTTATGATTTCATATTGTGCTTGCAA
ATCCAAGAATGGAAAATAA

Translation (472 aa):
MGCDRNCGLIAGAVIGAVLAVFGGILMPVGDMLIEKTIKREVVLEEGTTAFKNWVKTGTTVYRQFWIFDV
QNPDDVAKNSSKIKVKQRGPYTYRVRYLAKENITQDPEDHTVSFVQPNGAIFEPSLSVGTEDDNFTVLNL
AVAAAPHIYQNSFVQVVLNSLIKKSKSSMFQTRSLKELLWGYKDPFLSLVPYPISTTVGVFYPYNDTVDG
VYKVFNGKDNISKVAIIESYKGKRNLSYWPSYCDMINGTDAASFPPFVEKSRTLRFFSSDICRSIYAVFG
SEIDLKGIPVYRFVLPANAFASPLQNPDNHCFCTEKVISNNCTSYGVLDIGKCKEGKPVYISLPHFLHAS
PDVSEPIEGLHPNEDEHRTYLDVEPITGFTLQFAKRLQVNILVKPARKIEALKNLKRPYIVPILWLNETG
TIGDEKAEMFKTQVTGKIKLLGMVEMALLGIGVVMFVAFMISYCACKSKNGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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