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Report for CCDS89363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89363.1 Public Mus musculus 19 Smc5 23 108 98 CCDS HistoryNCBI Gene:226026Re-query CCDS DB by CCDS ID:89363.1Re-query CCDS DB by GeneID:226026See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89363.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000226111.1 ENSMUSP00000153420.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226111.1Link to Ensembl Protein Viewer:ENSMUSP00000153420.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226111Re-query CCDS DB by Protein ID:ENSMUSP00000153420
Original member NCBI NM_001252685.1 NP_001239614.1 Updated not alive Link to Nucleotide Sequence:NM_001252685.1Link to Protein Sequence:NP_001239614.1Re-query CCDS DB by Nucleotide ID:NM_001252685Re-query CCDS DB by Protein ID:NP_001239614
Current member NCBI NM_001252685.2 NP_001239614.1 Accepted alive Link to Nucleotide Sequence:NM_001252685.2Link to Protein Sequence:NP_001239614.1Re-query CCDS DB by Nucleotide ID:NM_001252685Re-query CCDS DB by Protein ID:NP_001239614Link to BLAST:NP_001239614.1

Chromosomal Locations for CCDS 89363.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 23208828 23208968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23210251 23210346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23210424 23210603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23213751 23213870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23214066 23214170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23214642 23214740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23218405 23218530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23228174 23228296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23228915 23229038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23231558 23231727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23231819 23231992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23233963 23234095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23235874 23235968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23238885 23238998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23242636 23242790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23243855 23244110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23254677 23254748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23257488 23257649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23259647 23259787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23261333 23261467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23263604 23263766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23265666 23265718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 23268727 23268825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3036 nt):
ATGATCATTGGAGCCAATGGAACAGGGAAGTCAAGCATCGTGTGTGCCATTTGCCTCGGACTCGCAGGCA
AACCTGCTTTCATGGGACGTGCAGATAAGGTTGGGTTTTTCGTGAAGAGAGGATGTTCCAAAGGTTTGGT
TGAAATTGAACTGTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAG
TCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACA
TCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAGGACAAAGTTGGGGAATTTGCTAAACTCAGCAAAAT
TGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAA
AACTTCAGGGAGAAGGAGAAGCAGCTAGAGACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGG
TTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAAT
TGAGATGCTTGAGGCCAAAAGACCATGGGTGGAATATGAGAATGTACGTCAGGAATATGAAGGTGTGAAA
CTAATTCGTGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAGATTCCTATGACACGGCGGA
TTGAGGAGATTGACCGGCAGCGTCACACTTTGGAAGTTCGAATCAAAGAAAAGTCAACCGATATTAAGGA
AGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAGATTAAGGAACTTCAG
CAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGA
TAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGT
CACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGA
GAAAAGGAAATGCTGGAGAAGCAGAGACGGAGTGTGAGTGATCATATTACACGGTTTGACAATCTTATGA
ATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAA
CAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACGATTAATATGAAAGATAATAAAAAT
GCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATA
TGGAGATTTTCCTCAGAGAGGTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGAT
CTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAAACAATATGGATTTTTTTCATATCTT
CGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTC
CTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGGTAATACAAGAAACTCGATTAAAACAAATTTA
TACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCC
CTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAA
AGGAAATGAATAGACAACTGGAAGCAGTGGACTCAGGGTTGGCTGCCTTGCGTGATACGAACAGGCACCT
TGAGCTCAAAGACAACGAGCTAAGGCTGAAGAAGAAGGAGCTTCTTGAAAGAAAAACCAGGAAAAGGCAG
CTGGAGCAGAAAATCAGCTCCAAGCTGGCAAGTATAAGGCTGATGGAACAGGATACTTGCAATCTGGAAG
AGGAAGAACGAAAAGCAAGTACCAAAATAAAAGAAATAAATGTTCAGAAAGCAAAACTTGTTACTGAATT
AACAGGCCTTGTAAAGATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACA
GTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAAC
AACAATTCATTGAATTGGATGACAACAGACAGAGATTGTTACAGAAGTGCAAGGAACTTATGAAGAAAGC
TAGGCAAGTATGCAACCTGAGTGCTGACCAAGCTGTTCCACAAGAATTCCAGACAGCTTTTCAAGATCTC
CCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGAC
TGAATCCTTCGGTAGTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACT
GCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAGGTGAAAGAAAGGTGGCTGAAC
CCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTG
GTGAAGTTGATCTTCATACAGAAAATGAGGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATT
TCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACT
ATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAGG
GTATGGACCCAATTAATGAACGGAGAGTATTTGAAATGGTTGTGAACACTGCCTGTAAAGAGAACACATC
CCAGTATTTCTTCATCACACCGAAGCTTCTACAGAATCTTCCTTATTCTGAAAAGATGACAGTGTTGTTT
GTCTACAATGGTCCTCATATGCTGGAGCCAAACCGATGGAATTTAAAGGCTTTTCAAAGGCGTCGGCGAA
GGATAACCTTTACTCAACCTCAGTGA

Translation (1011 aa):
MIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSKGLVEIELFRTSGNLIITREIDVIKNQ
SFWFINKKPVTQKIVEEQVAALNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSVGPPEMHRYHCELK
NFREKEKQLETSCKEKTEYLEKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEGVK
LIRDRVKEEVRKLKEGQIPMTRRIEEIDRQRHTLEVRIKEKSTDIKEASQKCKQRQDLIERKDRQIKELQ
QALTVKQNEELDRQKRISNTRKMIEDLQSELKTAENCENLQPQIDTVTNDLRRVQEEKALCEGEIIDKQR
EKEMLEKQRRSVSDHITRFDNLMNQKEDKLRQRYRDTYDAVLWLRNNRDRFKQRVCEPIMLTINMKDNKN
AKYVENHISSNDLRAFVFESQEDMEIFLREVRDNKKLRVNAVIAPKISYADKAPSRSLNDLKQYGFFSYL
RELFDAPDPVMSYLCCQYHIHEVPVGTERTRERIERVIQETRLKQIYTAEEKYVLKTSVYSNKVISSNTS
LKVAQFLTVTVDLEQRRHLEEQLKEMNRQLEAVDSGLAALRDTNRHLELKDNELRLKKKELLERKTRKRQ
LEQKISSKLASIRLMEQDTCNLEEEERKASTKIKEINVQKAKLVTELTGLVKICTSFQIQKVDLILQNTT
VISEKNKLEADYMASSSQLRVTEQQFIELDDNRQRLLQKCKELMKKARQVCNLSADQAVPQEFQTAFQDL
PNTLDEIDALLTEERSRASCFTGLNPSVVVEEYSKREVEIQQLTEELQGKKVELDEYRENISQVKERWLN
PLKELVEKINEKFSNFFSSMQCAGEVDLHTENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVST
MLYLMALQELNRCPFRVVDEINQGMDPINERRVFEMVVNTACKENTSQYFFITPKLLQNLPYSEKMTVLF
VYNGPHMLEPNRWNLKAFQRRRRRITFTQPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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