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Report for CCDS32483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32483.1 Public Homo sapiens 16 PMFBP1 24 110 108 CCDS HistoryNCBI Gene:83449Re-query CCDS DB by CCDS ID:32483.1Re-query CCDS DB by GeneID:83449See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32483.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000237353.15 ENSP00000237353.10 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000237353.15Link to Ensembl Protein Viewer:ENSP00000237353.10Re-query CCDS DB by Nucleotide ID:ENST00000237353Re-query CCDS DB by Protein ID:ENSP00000237353
Original member Current member NCBI NM_031293.3 NP_112583.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031293.3Link to Protein Sequence:NP_112583.2Re-query CCDS DB by Nucleotide ID:NM_031293Re-query CCDS DB by Protein ID:NP_112583Link to BLAST:NP_112583.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112583.2 1007 Q8TBY8-2 1007 100% 0 0

Chromosomal Locations for CCDS 32483.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 72119338 72119354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72119851 72120089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72122914 72122988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72123546 72123649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72124767 72124934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72125238 72125405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72125968 72126132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72128657 72128794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72129066 72129233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72130213 72130357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72130533 72130722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72132748 72132991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72136448 72136605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72136693 72136819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72139289 72139399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72140412 72140582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72150608 72150829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72154211 72154459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72164764 72164916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72171197 72171208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3024 nt):
ATGAAAGATGAGGCGGGGGAGAGAGACAGAGAAGTGAGCAGCCTGAACAGCAAGCTGTTAAGCCTGCAAC
TTGACATCAAGAATCTGCACGATGTCTGCAAGAGACAGAGGAAGACCTTGCAGGACAATCAGCTCTGCAT
GGAGGAGGCAATGAACAGCAGCCACGACAAGAAGCAAGCACAGGCATTAGCATTCGAGGAGTCAGAGGTG
GAATTTGGGTCCAGTAAACAGTGTCATCTGAGACAACTCCAGCAACTGAAGAAAAAATTGCTGGTCCTTC
AACAAGAACTGGAGTTTCACACAGAGGAGTTGCAGACTTCTTACTATTCTCTCCGCCAGTATCAGTCCAT
CCTAGAGAAGCAGACTTCCGACCTGGTTCTTCTGCACCATCACTGCAAACTGAAAGAAGATGAGGTGATT
CTCTATGAGGAGGAAATGGGAAATCACAACGAGAACACAGGGGAGAAGCTCCATTTGGCGCAGGAGCAAC
TCGCCTTGGCCGGGGACAAGATCGCCTCTCTAGAGAGGAGCTTAAACCTCTACAGGGATAAATACCAGTC
TTCCCTGAGCAACATCGAGTTACTAGAATGCCAAGTGAAGATGTTGCAGGGGGAACTCGGCGGGATCATG
GGTCAGGAGCCTGAGAACAAGGGTGATCATTCAAAGGTACGGATATACACTTCTCCTTGCATGATTCAAG
AGCATCAGGAGACTCAGAAACGACTGTCTGAAGTCTGGCAAAAGGTCTCTCAACAGGATGATCTCATTCA
AGAACTTCGAAATAAGCTGGCCTGCAGTAACGCTTTGGTTCTGGAGCGTGAAAAGGCTTTGATAAAACTA
CAAGCCGATTTTGCTTCCTGTACAGCCACCCACAGATACCCTCCTAGCTCCTCAGAAGAGTGTGAAGACA
TCAAAAAGATACTGAAGCACTTGCAGGAGCAGAAAGACAGCCAGTGCCTGCATGTGGAGGAGTACCAGAA
CCTGGTGAAGGATCTGCGCGTGGAACTAGAGGCCGTGTCGGAACAGAAGAGAAACATCATGAAGGACATG
ATGAAGCTGGAGCTGGACCTGCACGGACTGCGGGAGGAGACATCTGCCCACATTGAGAGGAAGGATAAGG
ACATCACCATCCTGCAGTGCCGGCTGCAGGAGCTGCAGCTGGAGTTCACCGAGACCCAAAAGCTCACTTT
GAAGAAAGACAAGTTCCTCCAAGAGAAAGATGAGATGCTGCAAGAGCTGGAGAAGAAACTGACACAGGTT
CAGAACAGCCTCCTGAAAAAGGAGAAGGAGCTGGAGAAGCAGCAGTGCATGGCCACAGAACTTGAAATGA
CAGTCAAGGAGGCTAAGCAGGACAAGTCCAAGGAGGCGGAGTGCAAGGCCCTGCAGGCTGAGGTCCAGAA
GCTGAAGAACAGTCTCGAAGAGGCCAAGCAGCAGGAGAGGCTGGCTGCTCAGCAAGCAGCCCAGTGCAAA
GAAGAGGCTGCACTGGCAGGCTGTCACCTGGAGGACACCCAGAGGAAACTGCAGAAGGGTCTCCTCCTGG
ACAAGCAGAAGGCAGACACCATCCAGGAACTACAGAGAGAACTTCAGATGCTGCAGAAGGAGTCCTCGAT
GGCTGAGAAGGAACAAACCTCCAACAGAAAACGGGTGGAGGAGCTGTCATTAGAACTCTCTGAAGCCCTG
AGGAAGCTTGAAAATTCAGACAAGGAAAAGAGGCAGCTTCAGAAGACAGTGGCTGAGCAGGATATGAAAA
TGAATGACATGCTTGATCGTATCAAGCACCAGCACAGGGAGCAAGGCTCCATCAAATGCAAGTTAGAAGA
AGATCTTCAGGAGGCCACAAAGCTTCTGGAGGACAAACGGGAGCAGTTGAAGAAGAGCAAAGAGCATGAG
AAGCTGATGGAGGGAGAACTTGAAGCTTTGCGGCAGGAATTTAAAAAGAAAGACAAGACGTTGAAAGAGA
ATTCCAGAAAGTTGGAGGAAGAAAATGAGAATCTCCGAGCAGAGCTACAGTGTTGTTCTACACAACTGGA
ATCCTCTCTCAACAAATACAACACCAGCCAGCAAGTCATCCAAGACTTGAATAAAGAGATAGCCCTTCAG
AAGGAGTCCTTAATGAGCCTGCAGGCCCAGCTGGACAAAGCTCTGCAGAAGGAGAAGCACTATCTCCAGA
CTACCATCACCAAAGAAGCCTATGATGCATTATCCCGGAAGTCAGCCGCCTGCCAGGATGACCTGACACA
AGCCCTCGAGAAGCTCAATCACGTGACCTCAGAGACAAAGAGCCTGCAGCAAAGCTTGACACAGACCCAA
GAGAAGAAAGCTCAGCTGGAAGAGGAAATCATTGCTTATGAGGAAAGGATGAAAAAGCTCAATACGGAAT
TAAGAAAACTGCGGGGCTTCCACCAGGAGAGTGAGCTGGAGGTGCACGCCTTTGACAAGAAGCTAGAGGA
GATGAGCTGCCAGGTGCTGCAGTGGCAGAAGCAACACCAGAATGACCTCAAGATGCTGGCAGCCAAAGAG
GAGCAGCTCAGGGAGTTCCAGGAGGAGATGGCCGCCTTAAAAGAGAACCTCCTTGAGGACGATAAGGAGC
CCTGCTGCCTGCCCCAGTGGTCTGTGCCCAAAGACACCTGTAGGCTCTACCGAGGGAATGATCAGATTAT
GACCAACTTGGAGCAATGGGCAAAACAGCAGAAGGTCGCCAATGAGAAACTAGGAAACCAGCTCCGAGAG
CAGGTGAAATACATTGCCAAGCTGAGTGGCGAAAAGGACCACCTCCACAGTGTAATGGTCCACTTGCAGC
AGGAAAACAAGAAGCTGAAGAAGGAGATAGAAGAGAAGAAGATGAAAGCCGAGAACACAAGGCTATGCAC
CAAAGCCCTAGGCCCGAGCAGAACGGAGTCCACACAGAGGGAGAAAGTGTGCGGCACCTTGGGCTGGAAG
GGGTTGCCCCAGGATATGGGTCAAAGAATGGACCTCACCAAGTACATCGGGATGCCCCACTGCCCGGGTT
CCTCATACTGCTAG

Translation (1007 aa):
MKDEAGERDREVSSLNSKLLSLQLDIKNLHDVCKRQRKTLQDNQLCMEEAMNSSHDKKQAQALAFEESEV
EFGSSKQCHLRQLQQLKKKLLVLQQELEFHTEELQTSYYSLRQYQSILEKQTSDLVLLHHHCKLKEDEVI
LYEEEMGNHNENTGEKLHLAQEQLALAGDKIASLERSLNLYRDKYQSSLSNIELLECQVKMLQGELGGIM
GQEPENKGDHSKVRIYTSPCMIQEHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLEREKALIKL
QADFASCTATHRYPPSSSEECEDIKKILKHLQEQKDSQCLHVEEYQNLVKDLRVELEAVSEQKRNIMKDM
MKLELDLHGLREETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQV
QNSLLKKEKELEKQQCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCK
EEAALAGCHLEDTQRKLQKGLLLDKQKADTIQELQRELQMLQKESSMAEKEQTSNRKRVEELSLELSEAL
RKLENSDKEKRQLQKTVAEQDMKMNDMLDRIKHQHREQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHE
KLMEGELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEIALQ
KESLMSLQAQLDKALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEKLNHVTSETKSLQQSLTQTQ
EKKAQLEEEIIAYEERMKKLNTELRKLRGFHQESELEVHAFDKKLEEMSCQVLQWQKQHQNDLKMLAAKE
EQLREFQEEMAALKENLLEDDKEPCCLPQWSVPKDTCRLYRGNDQIMTNLEQWAKQQKVANEKLGNQLRE
QVKYIAKLSGEKDHLHSVMVHLQQENKKLKKEIEEKKMKAENTRLCTKALGPSRTESTQREKVCGTLGWK
GLPQDMGQRMDLTKYIGMPHCPGSSYC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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