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Report for CCDS12971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12971.1 Public Homo sapiens 19 ZSCAN18 24 110 108 CCDS HistoryNCBI Gene:65982Re-query CCDS DB by CCDS ID:12971.1Re-query CCDS DB by GeneID:65982See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000240727.10 ENSP00000240727.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000240727.10Link to Ensembl Protein Viewer:ENSP00000240727.5Re-query CCDS DB by Nucleotide ID:ENST00000240727Re-query CCDS DB by Protein ID:ENSP00000240727
Original member Current member EBI ENST00000601144.6 ENSP00000468934.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000601144.6Link to Ensembl Protein Viewer:ENSP00000468934.1Re-query CCDS DB by Nucleotide ID:ENST00000601144Re-query CCDS DB by Protein ID:ENSP00000468934
Original member Current member NCBI NM_001145543.2 NP_001139015.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145543.2Link to Protein Sequence:NP_001139015.1Re-query CCDS DB by Nucleotide ID:NM_001145543Re-query CCDS DB by Protein ID:NP_001139015Link to BLAST:NP_001139015.1
Original member Current member NCBI NM_023926.5 NP_076415.3 Accepted alive Link to Nucleotide Sequence:NM_023926.5Link to Protein Sequence:NP_076415.3Re-query CCDS DB by Nucleotide ID:NM_023926Re-query CCDS DB by Protein ID:NP_076415Link to BLAST:NP_076415.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139015.1 510 Q8TBC5-1 510 100% 0 0
NP_076415.3 510 Q8TBC5-1 510 100% 0 0

Chromosomal Locations for CCDS 12971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58084685 58085379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58086174 58086266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58086906 58087008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58087316 58087404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58088688 58088837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58089865 58090267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGTTGCCTTTGGAGAAGGCGTTTGCCTCCCCCAGGAGCTCCCCAGCCCCGCCGGATCTGCCCACGCCGG
GGTCAGCAGCCGGAGTCCAGCAGGAAGAACCCGAGACCATCCCTGAGAGGACCCCTGCTGACCTGGAGTT
CTCCCGCCTGCGTTTCCGGGAATTTGTCTACCAGGAGGCTGCCGGGCCCCACCAGACCCTGGCCCGGCTG
CATGAGCTGTGCCGCCAGTGGCTGATGCCTGAGGCGCGCTCCAAGGAGCAGATGCTGGAGCTGCTGGTGC
TGGAGCAGTTCCTGGGCATCCTGCCTGATAAGGTCCGGCCCTGGGTGGTGGCACAGTACCCTGAGAGCTG
CAAGAAGGCAGCCTCCCTGGTGGAGGGCCTCGCTGATGTCCTGGAAGAGCCAGGGATGCTGCTGGGCTCC
CCTGCGGGCTCATCCTCAATTCTTAGCGATGGAGTGTACGAGAGGCACATGGACCCTCTGCTGCTACCAG
GCGAGCTCGCGAGCCCCAGCCAGGCCCTTGGAGCTGGGGAGATCCCGGCACCTTCTGAGACACCCTGGCT
TTCTCCGGACCCCCTGTTTCTGGAACAGAGGAGGGTCAGAGAAGCAAAGACCGAAGAGGACGGCCCTGCC
AACACCGAGCAGAAGCTGAAGTCCTTTCCAGAGGACCCTCAGCACCTGGGGGAGTGGGGCCACCTGGACC
CTGCCGAGGAGAACCTGAAGAGCTACCGGAAGCTGCTCCTGTGGGGGTATCAGCTTTCCCAGCCTGACGC
TGCCTCCAGGCTGGACACTGAGGAACTCCGGTTGGTGGAAAGAGATCCACAAGGAAGCAGCCTCCCAGAA
GGCGGGAGGCGGCAGGAGAGCGCTGGGTGCGCCTGCGAGGAGGCCGCCCCCGCGGGGGTGCTGCCTGAGC
TGCCTACGGAGGCGCCCCCTGGGGACGCCCTTGCCGATCCCCCGTCGGGCACCACTGAGGAGGAGGAAGA
GCAGCCTGGGAAGGCCCCGGACCCGCAGGACCCCCAGGACGCGGAGTCCGACTCTGCCACCGGATCGCAG
AGGCAGTCCGTCATCCAGCAGCCTGCCCCGGACAGGGGCACGGCGAAACTGGGAACCAAGAGGCCGCACC
CCGAGGATGGGGACGGGCAGAGCCTCGAGGGCGTCTCTAGCTCCGGCGACAGCGCAGGGCTGGAGGCCGG
GCAGGGCCCTGGGGCTGACGAGCCGGGCTTGTCCCGCGGGAAGCCCTATGCCTGCGGCGAGTGCGGGGAG
GCCTTCGCGTGGCTCTCGCACCTGATGGAGCACCACAGCAGCCATGGCGGCCGGAAGCGCTACGCCTGTC
AGGGCTGCTGGAAGACCTTCCACTTCAGCCTGGCCCTAGCCGAGCACCAGAAGACCCACGAGAAGGAGAA
AAGCTACGCGCTGGGGGGCGCCCGGGGCCCCCAACCGTCCACCCGCGAAGCCCAGGCGGGGGCTAGGGCG
GGCGGTCCCCCAGAGAGCGTGGAGGGCGAGGCTCCCCCCGCACCCCCAGAGGCGCAGAGGTGA

Translation (510 aa):
MLPLEKAFASPRSSPAPPDLPTPGSAAGVQQEEPETIPERTPADLEFSRLRFREFVYQEAAGPHQTLARL
HELCRQWLMPEARSKEQMLELLVLEQFLGILPDKVRPWVVAQYPESCKKAASLVEGLADVLEEPGMLLGS
PAGSSSILSDGVYERHMDPLLLPGELASPSQALGAGEIPAPSETPWLSPDPLFLEQRRVREAKTEEDGPA
NTEQKLKSFPEDPQHLGEWGHLDPAEENLKSYRKLLLWGYQLSQPDAASRLDTEELRLVERDPQGSSLPE
GGRRQESAGCACEEAAPAGVLPELPTEAPPGDALADPPSGTTEEEEEQPGKAPDPQDPQDAESDSATGSQ
RQSVIQQPAPDRGTAKLGTKRPHPEDGDGQSLEGVSSSGDSAGLEAGQGPGADEPGLSRGKPYACGECGE
AFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLALAEHQKTHEKEKSYALGGARGPQPSTREAQAGARA
GGPPESVEGEAPPAPPEAQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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