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Report for CCDS6796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6796.1 Public Homo sapiens 9 C9orf43 24 110 108 CCDS HistoryNCBI Gene:257169Re-query CCDS DB by CCDS ID:6796.1Re-query CCDS DB by GeneID:257169See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6796.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288462.4 ENSP00000288462.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000288462.4Link to Ensembl Protein Viewer:ENSP00000288462.4Re-query CCDS DB by Nucleotide ID:ENST00000288462Re-query CCDS DB by Protein ID:ENSP00000288462
Original member Current member EBI ENST00000374165.6 ENSP00000363280.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374165.6Link to Ensembl Protein Viewer:ENSP00000363280.1Re-query CCDS DB by Nucleotide ID:ENST00000374165Re-query CCDS DB by Protein ID:ENSP00000363280
Original member Current member NCBI NM_001278629.2 NP_001265558.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001278629.2Link to Protein Sequence:NP_001265558.1Re-query CCDS DB by Nucleotide ID:NM_001278629Re-query CCDS DB by Protein ID:NP_001265558Link to BLAST:NP_001265558.1
Original member Current member NCBI NM_152786.3 NP_689999.1 Accepted alive Link to Nucleotide Sequence:NM_152786.3Link to Protein Sequence:NP_689999.1Re-query CCDS DB by Nucleotide ID:NM_152786Re-query CCDS DB by Protein ID:NP_689999Link to BLAST:NP_689999.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265558.1 461 Q8TAL5 461 100% 0 0
NP_689999.1 461 Q8TAL5 461 100% 0 0

Chromosomal Locations for CCDS 6796.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 113413494 113413644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113413759 113413894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113419108 113419165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113421103 113421203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113422549 113422585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113423326 113423498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113424166 113424316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113425019 113425076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113425344 113425420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113425643 113425730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113428147 113428223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113428900 113428963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113429172 113429386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGGACTTGCCAGATGAGAGCCAGTGGGACGAAACCACCTGTGGCTTGGCTGTTTGTCAGCACCCACAAT
GCTGGGCAACTATCCGCCGCATTGAGAGGGGCCATCCTCGAATCCTCGGCTCATCCTGCAAAACTCCCCT
GGATGCTGAAGATAAACTCCCAGTGCTCACCGTGGTAGACATCTTAGATTCCGGCTTTGCAGCTCATCAT
TTACCAGAATGTACCTTTACTAAGGCCCATTCTTTATTGTCTCAGAGTTCAAAGTTTTACTCCAAATTTC
ATGGCAGGCCTCCGAAGGGTTTACCTGACAAAAGTTTGATCAACTGTACTAACAGACTTCCCAAATTTCC
AGTGTTGAATTTGAATGAGACGCAACTTCCCTGCCCTGAAGATGTTAGAAATATGGTTGTATTGTGGATC
CCAGAAGAAACAGAGATACATGTGAGCCAGCATGGGAAGAAGAAAAGAAAGAACTCGGCAGTGAAAAGCA
AGTCATTTCTGGGTCTCTCTGGAAATCAGTCCGCAGGAACACGAGTAGGAACACCAGGGATGATCGTGCC
TCCCCCAACCCCAGTGCAATTGTCTGAACAATTCAGTTCAGATTTCCTACCTCTCTGGGCTCAATCCGAA
GCGTTACCTCAGGATCTACTGAAGGAACTTTTGCCAGGTGGAAAGCAAACCATGCTCTGTCCAGAGATGA
AGATAAAATTGGCCATGATGAAAAAGAATCTTCCCTTGGAAAAGAACCGACCTGACAGTGTGATTTCTTC
TAAGATGTTTCTATCTATACACCGCCTCACCCTGGAAAGACCAGCACTGCGATATCCTGAACGTTTGAAG
AAATTACATAACCTGAAGACAGAAGGTTACAGGAAACAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAAC
AGAAGAAGGTGAAAACACCTATTAAGAAACAGGAGGCTAAAAAGAAAGCCAAGAGTGATCCAGGGATCCA
GAGCACTTCACATAAACATCCAGTTACCACCGTTCATGACCGTCTCTATGGTTACAGAACTCTGCCAGGT
CAGAACAGTGACATGAAGCAGCAGCAGCAGATGGAAAAAGGAACCACTTCGAAACAGGATTCCACGGAGA
GACCAAAGATGAACTACTATGACCATGCGGATTTCCACCACAGTGTAAAAAGTCCTGAATTGTATGAAAC
AGAACCCACTAACAAGGACATTAGTGCTCCAGTGGACGCTGTGCCAGAAGCCCAGGCTGCCAGGCAAAAG
AAGATCTCCTTTAACTTTTCAGAAATTATGGCTAGCACAGGCTGGAACTCTGAGCTCAAACTACTTAGGA
TTCTTCAGGACACTGATGATGAGGATGAGGAGGACCAGTCCTCTGGGGCAGAGTGA

Translation (461 aa):
MDLPDESQWDETTCGLAVCQHPQCWATIRRIERGHPRILGSSCKTPLDAEDKLPVLTVVDILDSGFAAHH
LPECTFTKAHSLLSQSSKFYSKFHGRPPKGLPDKSLINCTNRLPKFPVLNLNETQLPCPEDVRNMVVLWI
PEETEIHVSQHGKKKRKNSAVKSKSFLGLSGNQSAGTRVGTPGMIVPPPTPVQLSEQFSSDFLPLWAQSE
ALPQDLLKELLPGGKQTMLCPEMKIKLAMMKKNLPLEKNRPDSVISSKMFLSIHRLTLERPALRYPERLK
KLHNLKTEGYRKQQQRQQQQQQQQKKVKTPIKKQEAKKKAKSDPGIQSTSHKHPVTTVHDRLYGYRTLPG
QNSDMKQQQQMEKGTTSKQDSTERPKMNYYDHADFHHSVKSPELYETEPTNKDISAPVDAVPEAQAARQK
KISFNFSEIMASTGWNSELKLLRILQDTDDEDEEDQSSGAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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