NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3127.1 Public Homo sapiens 3 PCOLCE2 24 110 108 CCDS HistoryNCBI Gene:26577Re-query CCDS DB by CCDS ID:3127.1Re-query CCDS DB by GeneID:26577See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3127.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295992.8 ENSP00000295992.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295992.8Link to Ensembl Protein Viewer:ENSP00000295992.3Re-query CCDS DB by Nucleotide ID:ENST00000295992Re-query CCDS DB by Protein ID:ENSP00000295992
Original member Current member NCBI NM_013363.4 NP_037495.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013363.4Link to Protein Sequence:NP_037495.1Re-query CCDS DB by Nucleotide ID:NM_013363Re-query CCDS DB by Protein ID:NP_037495Link to BLAST:NP_037495.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037495.1 415 Q9UKZ9 415 100% 0 0

Chromosomal Locations for CCDS 3127.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142818335 142818465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142820878 142821045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142823532 142823615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142829692 142829846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142838770 142838906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142842924 142843048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142848217 142848472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142887669 142887777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142888814 142888896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGAGGGGCGCGAACGCCTGGGCGCCACTCTGCCTGCTGCTGGCTGCCGCCACCCAGCTCTCGCGGCAGC
AGTCCCCAGAGAGACCTGTTTTCACATGTGGTGGCATTCTTACTGGAGAGTCTGGATTTATTGGCAGTGA
AGGTTTTCCTGGAGTGTACCCTCCAAATAGCAAATGTACTTGGAAAATCACAGTTCCCGAAGGAAAAGTA
GTCGTTCTCAATTTCCGATTCATAGACCTCGAGAGTGACAACCTGTGCCGCTATGACTTTGTGGATGTGT
ACAATGGCCATGCCAATGGCCAGCGCATTGGCCGCTTCTGTGGCACTTTCCGGCCTGGAGCCCTTGTGTC
CAGTGGCAACAAGATGATGGTGCAGATGATTTCTGATGCCAACACAGCTGGCAATGGCTTCATGGCCATG
TTCTCCGCTGCTGAACCAAACGAAAGAGGGGATCAGTATTGTGGAGGACTCCTTGACAGACCTTCCGGCT
CTTTTAAAACCCCCAACTGGCCAGACCGGGATTACCCTGCAGGAGTCACTTGTGTGTGGCACATTGTAGC
CCCAAAGAATCAGCTTATAGAATTAAAGTTTGAGAAGTTTGATGTGGAGCGAGATAACTACTGCCGATAT
GATTATGTGGCTGTGTTTAATGGCGGGGAAGTCAACGATGCTAGAAGAATTGGAAAGTATTGTGGTGATA
GTCCACCTGCGCCAATTGTGTCTGAGAGAAATGAACTTCTTATTCAGTTTTTATCAGACTTAAGTTTAAC
TGCAGATGGGTTTATTGGTCACTACATATTCAGGCCAAAAAAACTGCCTACAACTACAGAACAGCCTGTC
ACCACCACATTCCCTGTAACCACGGGTTTAAAACCCACCGTGGCCTTGTGTCAACAAAAGTGTAGACGGA
CGGGGACTCTGGAGGGCAATTATTGTTCAAGTGACTTTGTATTAGCCGGCACTGTTATCACAACCATCAC
TCGCGATGGGAGTTTGCACGCCACAGTCTCGATCATCAACATCTACAAAGAGGGAAATTTGGCGATTCAG
CAGGCGGGCAAGAACATGAGTGCCAGGCTGACTGTCGTCTGCAAGCAGTGCCCTCTCCTCAGAAGAGGTC
TAAATTACATTATTATGGGCCAAGTAGGTGAAGATGGGCGAGGCAAAATCATGCCAAACAGCTTTATCAT
GATGTTCAAGACCAAGAATCAGAAGCTCCTGGATGCCTTAAAAAATAAGCAATGTTAA

Translation (415 aa):
MRGANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGESGFIGSEGFPGVYPPNSKCTWKITVPEGKV
VVLNFRFIDLESDNLCRYDFVDVYNGHANGQRIGRFCGTFRPGALVSSGNKMMVQMISDANTAGNGFMAM
FSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAGVTCVWHIVAPKNQLIELKFEKFDVERDNYCRY
DYVAVFNGGEVNDARRIGKYCGDSPPAPIVSERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPV
TTTFPVTTGLKPTVALCQQKCRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQ
QAGKNMSARLTVVCKQCPLLRRGLNYIIMGQVGEDGRGKIMPNSFIMMFKTKNQKLLDALKNKQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH