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Report for CCDS7723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7723.1 Public Homo sapiens 11 TOLLIP 24 110 108 CCDS HistoryNCBI Gene:54472Re-query CCDS DB by CCDS ID:7723.1Re-query CCDS DB by GeneID:54472See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7723.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317204.11 ENSP00000314733.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317204.11Link to Ensembl Protein Viewer:ENSP00000314733.5Re-query CCDS DB by Nucleotide ID:ENST00000317204Re-query CCDS DB by Protein ID:ENSP00000314733
Original member Current member NCBI NM_019009.4 NP_061882.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019009.4Link to Protein Sequence:NP_061882.2Re-query CCDS DB by Nucleotide ID:NM_019009Re-query CCDS DB by Protein ID:NP_061882Link to BLAST:NP_061882.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061882.2 274 Q9H0E2-1 274 100% 0 0

Chromosomal Locations for CCDS 7723.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 1277039 1277253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1286002 1286092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1288624 1288776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1290227 1290409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1295645 1295794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 1309466 1309498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGCGACCACCGTCAGCACTCAGCGCGGGCCGGTGTACATCGGTGAGCTCCCGCAGGACTTCCTCCGCA
TCACGCCCACACAGCAGCAGCGGCAGGTCCAGCTGGACGCCCAGGCGGCCCAGCAGCTGCAGTACGGAGG
CGCAGTGGGCACCGTGGGCCGACTGAACATCACGGTGGTACAGGCAAAGTTGGCCAAGAATTACGGCATG
ACCCGCATGGACCCCTACTGCCGACTGCGCCTGGGCTACGCGGTGTACGAGACGCCCACGGCACACAATG
GCGCCAAGAATCCCCGCTGGAATAAGGTCATCCACTGCACGGTGCCCCCAGGCGTGGACTCTTTCTATCT
CGAGATCTTCGATGAGAGAGCCTTCTCCATGGACGACCGCATTGCCTGGACCCACATCACCATCCCGGAG
TCCCTGAGGCAGGGCAAGGTGGAGGACAAGTGGTACAGCCTGAGCGGGAGGCAGGGGGACGACAAGGAGG
GCATGATCAACCTCGTCATGTCCTACGCGCTGCTTCCAGCTGCCATGGTGATGCCACCCCAGCCCGTGGT
CCTGATGCCAACAGTGTACCAGCAGGGCGTTGGCTATGTGCCCATCACAGGGATGCCCGCTGTCTGTAGC
CCCGGCATGGTGCCCGTGGCCCTGCCCCCGGCCGCCGTGAACGCCCAGCCCCGCTGTAGCGAGGAGGACC
TGAAAGCCATCCAGGACATGTTCCCCAACATGGACCAGGAGGTGATCCGCTCCGTGCTGGAAGCCCAGCG
AGGGAACAAGGATGCCGCCATCAACTCCCTGCTGCAGATGGGGGAGGAGCCATAG

Translation (274 aa):
MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVVQAKLAKNYGM
TRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIFDERAFSMDDRIAWTHITIPE
SLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMVMPPQPVVLMPTVYQQGVGYVPITGMPAVCS
PGMVPVALPPAAVNAQPRCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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