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Report for CCDS35178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35178.1 Public Homo sapiens 9 QSOX2 24 110 108 CCDS HistoryNCBI Gene:169714Re-query CCDS DB by CCDS ID:35178.1Re-query CCDS DB by GeneID:169714See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358701.10 ENSP00000351536.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358701.10Link to Ensembl Protein Viewer:ENSP00000351536.5Re-query CCDS DB by Nucleotide ID:ENST00000358701Re-query CCDS DB by Protein ID:ENSP00000351536
Original member Current member NCBI NM_181701.4 NP_859052.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181701.4Link to Protein Sequence:NP_859052.3Re-query CCDS DB by Nucleotide ID:NM_181701Re-query CCDS DB by Protein ID:NP_859052Link to BLAST:NP_859052.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859052.3 698 Q6ZRP7 698 100% 0 0

Chromosomal Locations for CCDS 35178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 136208728 136209275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136211264 136211452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136215154 136215304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136216600 136216722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136218679 136218808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136219030 136219164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136221796 136221941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136223763 136223853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136224007 136224112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136224861 136224909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136226774 136226874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136245476 136245803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGGCGGCGGCCGGGGCGGCGGTGGCGCGCAGCCCGGGAATCGGAGCGGGACCTGCGCTGAGAGCCCGGC
GCTCGCCCCCGCCGCGGGCCGCACGGCTGCCGCGGCTGCTAGTGCTGCTAGCGGCGGCGGCGGTGGGGCC
GGGCGCGGGCGGTGCGGCGCGGCTGTACCGCGCGGGCGAGGACGCCGTGTGGGTGCTGGACAGCGGCAGC
GTGCGCGGGGCCACCGCCAACAGCTCGGCCGCGTGGCTCGTGCAGTTCTACTCGTCGTGGTGTGGCCACT
GCATCGGCTACGCGCCCACTTGGCGGGCCCTGGCTGGGGATGTGCGAGACTGGGCCAGTGCCATTCGCGT
CGCAGCTCTGGACTGCATGGAAGAGAAGAACCAGGCCGTGTGCCATGACTACGACATCCACTTCTACCCC
ACCTTCCGGTATTTTAAAGCATTTACAAAGGAGTTTACAACTGGAGAAAATTTTAAAGGACCTGACCGAG
AGCTGCGAACAGTCAGACAGACGATGATTGACTTCCTGCAGAACCACACGGAAGGAAGCCGGCCCCCTGC
CTGCCCGCGCCTAGACCCCATTCAGCCCAGTGATGTTCTTTCCCTTCTTGACAACCGTGGCAGCCATTAC
GTGGCTATTGTCTTTGAAAGCAACAGCTCCTACCTTGGACGGGAGGTGATCTTAGACCTGATCCCGTATG
AAAGCATCGTGGTGACCCGAGCACTGGACGGGGACAAAGCATTTCTGGAGAAACTTGGTGTTTCTTCAGT
CCCTTCGTGTTACCTGATCTACCCAAATGGGTCGCATGGATTGATTAACGTCGTGAAGCCTCTGCGGGCC
TTCTTTTCGTCTTATTTGAAGTCATTGCCGGATGTGAGGAAAAAATCGCTTCCCTTGCCTGAAAAGCCAC
ACAAAGAAGAAAATTCAGAAATCGTGGTTTGGAGAGAATTTGACAAGTCGAAGCTGTACACGGTGGACCT
GGAGTCAGGGCTACACTACCTCCTGCGGGTGGAGCTGGCAGCCCACAAGTCCCTGGCCGGAGCAGAGCTG
AAGACGCTCAAGGACTTTGTGACTGTCTTGGCCAAGCTGTTCCCTGGACGGCCGCCAGTCAAGAAGCTGT
TGGAGATGCTGCAGGAGTGGCTGGCCAGCCTTCCCCTGGACAGGATCCCCTACAACGCCGTGCTTGACCT
GGTCAACAACAAGATGCGGATTTCTGGAATATTCCTTACTAATCACATAAAGTGGGTTGGATGTCAAGGA
AGCCGATCTGAGTTGAGGGGTTACCCGTGTTCTCTCTGGAAACTGTTCCACACTTTGACTGTTGAAGCCT
CGACCCACCCAGATGCACTGGTTGGCACAGGCTTTGAAGACGACCCCCAGGCTGTGCTGCAGACAATGAG
GAGGTACGTTCACACCTTCTTTGGGTGTAAGGAATGTGGTGAGCACTTTGAGGAAATGGCTAAAGAATCC
ATGGACTCGGTGAAAACCCCAGACCAAGCCATCCTCTGGCTGTGGAAGAAGCATAATATGGTGAACGGCC
GCCTGGCAGGCCATCTGAGTGAGGATCCCCGGTTTCCAAAGCTTCAGTGGCCCACTCCGGACCTCTGCCC
AGCCTGCCATGAGGAAATTAAGGGCCTGGCCAGCTGGGATGAAGGCCACGTGCTCACATTCTTGAAGCAG
CACTATGGCCGCGACAACCTCTTAGACACGTATTCCGCAGACCAGGGGGATTCCAGTGAAGGAGGAACCC
TGGCCAGGGGTGAGGAAGAGGAGAAAAGACTCACTCCCCCAGAGGTGTCCCATGGAGACCGAGACACCCA
GAGCGTCCGTCCACCTGGTGCACTGGGCCCCAGGCCTGCCCTTCCAGAGAGCTTGCATCACAGCTTGGAC
GGGAAACTCCAGAGTCTGGATGGGCCCGGGGCCCACAAGGAGGTGGGCGGGGCCGCACCCTTCCTCGGGG
TTGACTTCTCCAGCCTGGACATGAGTCTCTGTGTCGTGCTGTACGTGGCTTCATCCCTGTTCCTCATGGT
GATGTACTTCTTCTTCCGGGTGAGGTCCAGGCGGTGGAAGGTCAAGCACCACCACCCGGCCGTGTGA

Translation (698 aa):
MAAAGAAVARSPGIGAGPALRARRSPPPRAARLPRLLVLLAAAAVGPGAGGAARLYRAGEDAVWVLDSGS
VRGATANSSAAWLVQFYSSWCGHCIGYAPTWRALAGDVRDWASAIRVAALDCMEEKNQAVCHDYDIHFYP
TFRYFKAFTKEFTTGENFKGPDRELRTVRQTMIDFLQNHTEGSRPPACPRLDPIQPSDVLSLLDNRGSHY
VAIVFESNSSYLGREVILDLIPYESIVVTRALDGDKAFLEKLGVSSVPSCYLIYPNGSHGLINVVKPLRA
FFSSYLKSLPDVRKKSLPLPEKPHKEENSEIVVWREFDKSKLYTVDLESGLHYLLRVELAAHKSLAGAEL
KTLKDFVTVLAKLFPGRPPVKKLLEMLQEWLASLPLDRIPYNAVLDLVNNKMRISGIFLTNHIKWVGCQG
SRSELRGYPCSLWKLFHTLTVEASTHPDALVGTGFEDDPQAVLQTMRRYVHTFFGCKECGEHFEEMAKES
MDSVKTPDQAILWLWKKHNMVNGRLAGHLSEDPRFPKLQWPTPDLCPACHEEIKGLASWDEGHVLTFLKQ
HYGRDNLLDTYSADQGDSSEGGTLARGEEEEKRLTPPEVSHGDRDTQSVRPPGALGPRPALPESLHHSLD
GKLQSLDGPGAHKEVGGAAPFLGVDFSSLDMSLCVVLYVASSLFLMVMYFFFRVRSRRWKVKHHHPAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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