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Report for CCDS5100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5100.1 Public Homo sapiens 6 TUBE1 24 110 108 CCDS HistoryNCBI Gene:51175Re-query CCDS DB by CCDS ID:5100.1Re-query CCDS DB by GeneID:51175See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5100.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368662.10 ENSP00000357651.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368662.10Link to Ensembl Protein Viewer:ENSP00000357651.5Re-query CCDS DB by Nucleotide ID:ENST00000368662Re-query CCDS DB by Protein ID:ENSP00000357651
Original member Current member NCBI NM_016262.5 NP_057346.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016262.5Link to Protein Sequence:NP_057346.1Re-query CCDS DB by Nucleotide ID:NM_016262Re-query CCDS DB by Protein ID:NP_057346Link to BLAST:NP_057346.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057346.1 475 Q9UJT0 475 100% 0 0

Chromosomal Locations for CCDS 5100.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 112071412 112071570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112071902 112072076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112072758 112072898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112074710 112074850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112075937 112076112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112076322 112076509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112079633 112079754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112081092 112081207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112084189 112084246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112086556 112086608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112087233 112087306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112087410 112087434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGACCCAGTCGGTGGTCGTACAGGTCGGCCAGTGCGGAAACCAGATCGGCTGCTGCTTCTGGGACCTGG
CACTAAGGGAGCACGCCGCGGTCAACCAGAAAGGAATTTATGATGAGGCAATAAGCAGCTTCTTTAGAAA
TGTGGACACCAGAGTGGTTGGTGATGGTGGAAGTATTTCCAAGGGAAAAATATGTTCTTTAAAAGCACGA
GCAGTCTTGATTGATATGGAAGAAGGGGTAGTGAATGAAATTCTGCAGGGACCACTGAGAGATGTATTTG
ATACGAAACAGCTCATCACTGATATTTCTGGCTCAGGAAATAATTGGGCCGTGGGTCACAAAGTTTTCGG
CAGTCTTTACCAAGACCAGATTTTAGAGAAATTCAGAAAGTCGGCAGAGCACTGTGATTGCTTGCAGTGT
TTCTTTATAATACATTCCATGGGAGGAGGAACAGGATCTGGACTTGGCACATTTCTTTTAAAGGTGCTTG
AAGACGAATTCCCAGAAGTATACAGATTTGTGACTTCCATTTATCCTTCTGGTGAGGATGATGTCATAAC
CTCACCTTATAATAGCATCTTGGCAATGAAGGAACTTAATGAGCATGCAGACTGTGTATTGCCCATTGAC
AATCAATCTTTATTTGACATCATTAGCAAAATCGACCTCATGGTGAATTCTGGAAAGTTGGGTACAACTG
TGAAGCCAAAGAGTCTGGTTACTTCAAGTTCTGGGGCTTTAAAAAAGCAGCATAAGAAGCCCTTTGATGC
AATGAATAACATTGTGGCAAATTTGCTCCTCAACCTAACGAGCTCTGCAAGATTTGAAGGGTCCCTTAAT
ATGGACCTTAATGAAATCAGCATGAATTTAGTTCCTTTTCCTCAACTTCATTATCTCGTGTCAAGCCTAA
CACCTCTGTATACACTGACAGATGTTAACATTCCTCCTAGAAGATTGGATCAGATGTTTTCAGATGCCTT
TAGTAAAGATCACCAGCTGCTTCGGGCAGACCCCAAACACAGTCTTTACCTCGCCTGTGCACTCATGGTT
AGAGGAAATGTACAAATTTCAGATCTTCGTAGAAATATTGAAAGATTAAAACCATCTCTACAATTTGTCT
CCTGGAATCAAGAAGGCTGGAAGACCAGCCTGTGTTCCGTACCTCCTGTGGGCCATTCTCATTCGTTATT
AGCTTTAGCAAATAACACATGTGTGAAGCCCACCTTCATGGAACTGAAAGAGAGATTCATGAGGCTCTAC
AAGAAAAAGGCTCACCTTCATCACTATCTACAAGTTGAAGGGATGGAAGAAAGCTGTTTCACAGAAGCTG
TGTCATCTTTATCAGCACTCATACAGGAATATGACCAACTGGACGCCACAAAAAACATGCCTGTGCAGGA
TTTACCCAGACTAAGCATAGCTATGTGA

Translation (475 aa):
MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKAR
AVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQC
FFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGEDDVITSPYNSILAMKELNEHADCVLPID
NQSLFDIISKIDLMVNSGKLGTTVKPKSLVTSSSGALKKQHKKPFDAMNNIVANLLLNLTSSARFEGSLN
MDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMV
RGNVQISDLRRNIERLKPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELKERFMRLY
KKKAHLHHYLQVEGMEESCFTEAVSSLSALIQEYDQLDATKNMPVQDLPRLSIAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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