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Report for CCDS13417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13417.1 Public Homo sapiens 20 ZNFX1 24 110 108 CCDS HistoryNCBI Gene:57169Re-query CCDS DB by CCDS ID:13417.1Re-query CCDS DB by GeneID:57169See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371752.5 ENSP00000360817.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371752.5Link to Ensembl Protein Viewer:ENSP00000360817.1Re-query CCDS DB by Nucleotide ID:ENST00000371752Re-query CCDS DB by Protein ID:ENSP00000360817
Original member Current member EBI ENST00000396105.6 ENSP00000379412.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396105.6Link to Ensembl Protein Viewer:ENSP00000379412.1Re-query CCDS DB by Nucleotide ID:ENST00000396105Re-query CCDS DB by Protein ID:ENSP00000379412
Original member Current member NCBI NM_021035.3 NP_066363.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021035.3Link to Protein Sequence:NP_066363.1Re-query CCDS DB by Nucleotide ID:NM_021035Re-query CCDS DB by Protein ID:NP_066363Link to BLAST:NP_066363.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066363.1 1918 Q9P2E3-1 1918 100% 0 0

Chromosomal Locations for CCDS 13417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 49247267 49249711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49251527 49251622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49252720 49252830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49253666 49253811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49254495 49254649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49255808 49255947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49257417 49257664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49260463 49260577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49263334 49263483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49264716 49264864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49266135 49266266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49269942 49271750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49275779 49275839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5757 nt):
ATGGAGGAGAGAAGACCTCATCTGGATGCCAGGCCCAGGAATTCCCATACCAACCACAGAGGCCCTGTGG
ATGGAGAGTTACCACCAAGAGCTAGAAATCAGGCCAATAACCCACCAGCCAATGCTCTCCGAGGAGGAGC
CAGCCACCCTGGAAGGCATCCTAGGGCCAACAACCATCCTGCTGCTTACTGGCAGAGGGAAGAGAGATTT
AGGGCCATGGGCAGGAACCCACATCAAGGAAGGAGGAACCAGGAGGGGCATGCCAGCGACGAAGCTAGAG
ACCAAAGACATGACCAGGAGAATGACACCAGGTGGAGAAATGGCAACCAGGACTGTAGGAACCGCAGACC
ACCATGGTCCAATGACAACTTCCAGCAGTGGCGGACTCCCCACCAGAAGCCTACAGAACAGCCACAGCAG
GCGAAGAAACTGGGCTACAAGTTCTTAGAAAGTCTTCTGCAGAAAGACCCTTCTGAGGTGGTCATCACAC
TTGCCACAAGTTTAGGGCTGAAAGAGCTCCTTTCTCATTCTTCCATGAAATCTAACTTCCTTGAGCTCAT
CTGTCAGGTTCTTCGGAAGGCTTGTAGCTCCAAAATGGATCGCCAGAGTGTTCTCCATGTACTGGGCATA
TTGAAAAACTCCAAATTTCTCAAAGTCTGCCTGCCTGCTTATGTGGTAGGGATGATCACTGAACCCATCC
CTGACATCCGAAACCAGTATCCAGAGCACATAAGCAACATCATCTCCCTCCTCCAGGACCTTGTAAGTGT
CTTCCCTGCCAGCTCTGTGCAGGAAACTTCCATGCTGGTTTCCCTCCTGCCAACCTCTCTTAATGCTCTG
AGAGCCTCTGGTGTTGACATAGAAGAGGAAACGGAGAAGAACCTGGAAAAGGTACAGACTATCATTGAAC
ATCTGCAGGAAAAGAGGCGAGAGGGCACTTTGAGAGTGGATACCTACACTCTAGTGCAGCCTGAGGCAGA
AGACCATGTTGAGAGCTACCGAACCATGCCCATTTACCCTACCTACAATGAAGTGCACTTGGATGAGAGG
CCCTTCCTTCGCCCCAATATCATTTCTGGAAAATACGACAGCACTGCTATCTATCTGGATACCCACTTCC
GGCTCCTGCGAGAAGATTTCGTCAGACCTTTACGGGAAGGTATTTTGGAACTTCTCCAAAGCTTTGAAGA
CCAGGGCCTGAGGAAGAGAAAGTTTGATGACATCCGAATCTACTTTGACACCAGGATTATCACCCCCATG
TGTTCATCATCAGGCATAGTCTACAAGGTGCAGTTTGACACAAAACCACTGAAGTTTGTTCGCTGGCAGA
ATTCCAAACGATTGCTCTATGGGTCTTTGGTATGCATGTCCAAGGACAACTTCGAGACATTTCTTTTTGC
CACCGTATCTAACAGGGAGCAGGAAGATCTCTGCCGAGGAATTGTCCAGCTCTGCTTCAATGAGCAAAGC
CAACAGCTGCTAGCAGAGGTCCAGCCCTCTGACTCTTTCCTCATGGTAGAGACAACTGCATACTTTGAGG
CCTACAGGCACGTCCTGGAAGGACTCCAGGAGGTCCAGGAGGAAGATGTTCCCTTCCAGAGGAATATCGT
GGAGTGTAACTCTCATGTGAAGGAGCCAAGGTACTTGCTAATGGGGGGCAGATACGACTTTACCCCCTTA
ATAGAGAATCCTTCAGCCACTGGGGAATTTCTAAGAAATGTCGAGGGTTTGAGACATCCCAGAATTAATG
TCTTAGATCCTGGCCAGTGGCCCTCAAAAGAAGCCCTGAAGCTGGATGACTCCCAGATGGAAGCCTTGCA
GTTTGCTCTCACAAGGGAACTGGCTATTATTCAAGGACCTCCTGGAACAGGCAAAACCTATGTGGGTCTA
AAAATTGTTCAGGCCCTCCTAACCAACGAGTCTGTTTGGCAAATTAGCCTCCAGAAGTTCCCCATCTTGG
TTGTGTGTTATACTAATCATGCTTTGGACCAGTTTCTGGAAGGCATCTACAATTGTCAGAAGACCAGCAT
TGTGCGGGTGGGTGGAAGGAGCAACAGTGAAATCCTGAAGCAGTTCACCCTAAGGGAGCTGAGGAACAAG
CGGGAATTCCGCCGCAACCTCCCCATGCACCTCCGAAGGGCCTACATGAGTATCATGACACAGATGAAGG
AGTCAGAGCAAGAGCTTCATGAAGGAGCCAAGACCCTGGAGTGCACCATGCGTGGTGTCCTACGGGAACA
GTACCTGCAGAAGTACATCTCACCCCAGCACTGGGAAAGTCTCATGAATGGACCAGTGCAGGATAGTGAA
TGGATTTGCTTCCAGCACTGGAAGCATTCCATGATGCTGGAGTGGCTAGGTCTTGGTGTCGGTTCTTTCA
CGCAAAGTGTTTCTCCAGCAGGACCTGAGAATACAGCCCAGGCAGAAGGGGATGAGGAGGAAGAAGGGGA
GGAGGAGAGTTCGCTGATAGAGATCGCAGAGGAAGCTGACCTGATTCAAGCAGACCGGGTGATTGAGGAG
GAAGAGGTGGTGAGGCCCCAGCGGCGGAAGAAGGAAGAGAGTGGAGCAGACCAGGAGTTGGCTAAAATGC
TTCTGGCCATGAGGCTAGACCATTGTGGCACTGGGACAGCAGCTGGACAGGAGCAAGCCACAGGAGAGTG
GCAGACCCAGCGCAACCAGAAAAAGAAAATGAAAAAAAGAGTGAAGGATGAGCTTCGCAAACTGAACACC
ATGACTGCAGCCGAGGCCAACGAGATCGAGGATGTTTGGCAGCTGGACCTCAGTTCTCGCTGGCAGCTTT
ATAGGCTCTGGCTACAGTTGTACCAGGCTGACACCCGCCGGAAGATCCTCAGCTATGAACGCCAGTACCG
CACATCAGCAGAAAGAATGGCCGAGCTGAGACTCCAGGAAGACCTGCACATTCTTAAAGATGCCCAGGTT
GTAGGAATGACAACCACAGGTGCTGCCAAATACCGCCAGATCCTACAGAAGGTGGAGCCGAGGATTGTCA
TAGTGGAAGAAGCTGCGGAAGTCCTTGAGGCCCATACCATTGCCACATTGAGCAAAGCTTGCCAGCACCT
CATTTTGATTGGGGACCACCAGCAGCTGCGCCCCAGTGCCAACGTGTATGATCTGGCCAAGAACTTCAAC
CTTGAGGTGTCCCTTTTTGAACGGCTAGTGAAAGTAAACATTCCCTTTGTCCGTCTGAATTACCAGCACC
GTATGTGCCCTGAAATTGCCCGCCTTTTGACCCCCCACATTTACCAGGATCTGGAGAATCATCCATCTGT
TCTTAAGTATGAGAAGATTAAGGGGGTGTCTTCCAACCTTTTCTTTGTAGAACACAACTTTCCTGAACAG
GAAATCCAAGAGGGCAAAAGCCATCAGAACCAGCATGAGGCTCACTTTGTGGTAGAGCTGTGCAAGTACT
TCCTGTGCCAGGAATACCTGCCTTCCCAGATCACCATCCTCACTACCTATACCGGGCAGCTCTTCTGCCT
GCGCAAACTGATGCCTGCCAAGACATTTGCTGGCGTCAGGGTCCATGTTGTGGACAAATACCAAGGGGAA
GAGAATGACATCATCCTCCTCTCGCTAGTGCGGAGCAACCAAGAAGGCAAGGTGGGTTTTCTGCAGATAT
CCAACCGCATCTGTGTGGCCTTGTCCCGAGCCAAGAAGGGAATGTACTGCATCGGAAACATGCAGATGCT
GGCCAAGGTGCCCCTGTGGAGCAAGATCATTCATACACTTCGAGAGAACAATCAAATAGGCCCCATGCTC
CGGCTCTGCTGCCAGAACCACCCTGAAACCCACACCTTAGTATCCAAAGCTTCTGACTTCCAAAAAGTAC
CCGAAGGAGGCTGCAGCCTGCCCTGCGAGTTCCGCCTGGGCTGTGGGCATGTCTGCACCCGTGCCTGCCA
CCCTTATGACTCTTCACACAAGGAGTTCCAATGCATGAAGCCATGCCAGAAGGTCATCTGTCAGGAAGGG
CACCGGTGTCCCCTTGTTTGCTTCCAGGAGTGTCAGCCTTGTCAGGTGAAGGTGCCCAAAACCATTCCTC
GGTGCGGCCATGAACAAATGGTCCCTTGTTCCGTGCCTGAGTCAGATTTCTGCTGCCAGGAGCCTTGCTC
CAAGTCTCTGAGATGTGGGCACAGATGCAGCCACCCATGTGGTGAGGACTGTGTGCAGCTGTGTTCAGAA
ATGGTCACCATAAAACTCAAGTGTGGGCACAGTCAACCGGTAAAATGTGGTCATGTGGAAGGCCTCCTGT
ATGGTGGTCTGCTAGTCAAGTGTACCACAAAGTGTGGCACTATCTTGGACTGCGGGCATCCTTGCCCAGG
CTCCTGCCACAGCTGCTTCGAAGGGCGTTTCCATGAACGCTGTCAGCAGCCCTGCAAGCGCCTGCTTATC
TGCTCACACAAGTGCCAGGAACCATGCATTGGTGAGTGCCCACCCTGCCAGCGGACCTGTCAGAACCGCT
GTGTCCACAGCCAGTGCAAGAAGAAATGTGGGGAGCTGTGTAGTCCCTGCGTGGAACCCTGTGTCTGGCG
CTGCCAGCACTACCAGTGCACCAAACTCTGCTCTGAGCCCTGCAACCGACCCCCATGCTATGTGCCTTGT
ACTAAGCTGCTAGTTTGTGGCCACCCCTGCATTGGTCTCTGTGGGGAGCCATGCCCCAAGAAATGCCGGA
TCTGCCACATGGATGAGGTCACCCAAATATTCTTTGGCTTTGAGGATGAGCCTGATGCCCGCTTTGTGCA
GCTGGAAGACTGCAGCCACATCTTTGAGGTGCAAGCCCTAGACCGCTACATGAATGAACAGAAGGATGAT
GAAGTCGCCATCAGATTGAAAGTCTGCCCTATCTGCCAGGTGCCCATCCGCAAAAACCTGAGGTATGGAA
CTAGCATAAAACAGCGGCTAGAAGAGATTGAAATCATCAAGGAAAAGATCCAGGGCTCAGCAGGGGAAAT
AGCAACCAGCCAGGAACGGCTTAAGGCCCTGCTGGAGAGGAAGAGCCTCCTCCACCAGCTGCTTCCTGAA
GACTTCCTGATGTTAAAGGAGAAGCTGGCCCAGAAAAATCTGTCAGTGAAGGACCTGGGTCTGGTTGAGA
ATTACATCAGCTTCTATGACCACCTGGCCAGCCTGTGGGATTCCCTGAAAAAGATGCATGTCTTAGAAGA
GAAAAGAGTGAGGACTCGACTAGAACAGGTCCATGAGTGGCTGGCCAAGAAGCGCTTGAGCTTCACTAGC
CAGGAACTAAGTGACCTCCGAAGTGAAATCCAGAGGCTCACATACCTGGTGAACCTTCTGACCCGCTACA
AGATAGCAGAGAAGAAGGTGAAAGATAGCATAGCAGTAGAGGTCTATAGTGTCCAGAATATCCTTGAGAA
AACATGTAAGTTCACCCAAGAGGATGAACAACTTGTGCAGGAAAAGATGGAAGCTCTGAAAGCCACCCTT
CCCTGCTCTGGCCTGGGCATCTCAGAGGAAGAGCGAGTGCAGATTGTCAGTGCCATAGGTTATCCTCGTG
GTCACTGGTTCAAGTGCCGCAATGGCCATATCTATGTGATTGGCGATTGTGGGGGAGCCATGGAGAGGGG
CACGTGTCCTGACTGTAAGGAAGTGATTGGTGGCACAAATCATACTCTGGAAAGAAGCAACCAGCTTGCT
TCTGAAATGGATGGAGCCCAGCATGCTGCCTGGTCTGACACGGCCAACAACCTGATGAACTTTGAGGAGA
TCCAGGGGATGATGTAG

Translation (1918 aa):
MEERRPHLDARPRNSHTNHRGPVDGELPPRARNQANNPPANALRGGASHPGRHPRANNHPAAYWQREERF
RAMGRNPHQGRRNQEGHASDEARDQRHDQENDTRWRNGNQDCRNRRPPWSNDNFQQWRTPHQKPTEQPQQ
AKKLGYKFLESLLQKDPSEVVITLATSLGLKELLSHSSMKSNFLELICQVLRKACSSKMDRQSVLHVLGI
LKNSKFLKVCLPAYVVGMITEPIPDIRNQYPEHISNIISLLQDLVSVFPASSVQETSMLVSLLPTSLNAL
RASGVDIEEETEKNLEKVQTIIEHLQEKRREGTLRVDTYTLVQPEAEDHVESYRTMPIYPTYNEVHLDER
PFLRPNIISGKYDSTAIYLDTHFRLLREDFVRPLREGILELLQSFEDQGLRKRKFDDIRIYFDTRIITPM
CSSSGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREQEDLCRGIVQLCFNEQS
QQLLAEVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVECNSHVKEPRYLLMGGRYDFTPL
IENPSATGEFLRNVEGLRHPRINVLDPGQWPSKEALKLDDSQMEALQFALTRELAIIQGPPGTGKTYVGL
KIVQALLTNESVWQISLQKFPILVVCYTNHALDQFLEGIYNCQKTSIVRVGGRSNSEILKQFTLRELRNK
REFRRNLPMHLRRAYMSIMTQMKESEQELHEGAKTLECTMRGVLREQYLQKYISPQHWESLMNGPVQDSE
WICFQHWKHSMMLEWLGLGVGSFTQSVSPAGPENTAQAEGDEEEEGEEESSLIEIAEEADLIQADRVIEE
EEVVRPQRRKKEESGADQELAKMLLAMRLDHCGTGTAAGQEQATGEWQTQRNQKKKMKKRVKDELRKLNT
MTAAEANEIEDVWQLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILKDAQV
VGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFN
LEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQ
EIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGE
ENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENNQIGPML
RLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHPYDSSHKEFQCMKPCQKVICQEG
HRCPLVCFQECQPCQVKVPKTIPRCGHEQMVPCSVPESDFCCQEPCSKSLRCGHRCSHPCGEDCVQLCSE
MVTIKLKCGHSQPVKCGHVEGLLYGGLLVKCTTKCGTILDCGHPCPGSCHSCFEGRFHERCQQPCKRLLI
CSHKCQEPCIGECPPCQRTCQNRCVHSQCKKKCGELCSPCVEPCVWRCQHYQCTKLCSEPCNRPPCYVPC
TKLLVCGHPCIGLCGEPCPKKCRICHMDEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRYMNEQKDD
EVAIRLKVCPICQVPIRKNLRYGTSIKQRLEEIEIIKEKIQGSAGEIATSQERLKALLERKSLLHQLLPE
DFLMLKEKLAQKNLSVKDLGLVENYISFYDHLASLWDSLKKMHVLEEKRVRTRLEQVHEWLAKKRLSFTS
QELSDLRSEIQRLTYLVNLLTRYKIAEKKVKDSIAVEVYSVQNILEKTCKFTQEDEQLVQEKMEALKATL
PCSGLGISEEERVQIVSAIGYPRGHWFKCRNGHIYVIGDCGGAMERGTCPDCKEVIGGTNHTLERSNQLA
SEMDGAQHAAWSDTANNLMNFEEIQGMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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