NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6707.1 Public Homo sapiens 9 PTPDC1 24 110 108 CCDS HistoryNCBI Gene:138639Re-query CCDS DB by CCDS ID:6707.1Re-query CCDS DB by GeneID:138639See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6707.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375360.7 ENSP00000364509.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375360.7Link to Ensembl Protein Viewer:ENSP00000364509.3Re-query CCDS DB by Nucleotide ID:ENST00000375360Re-query CCDS DB by Protein ID:ENSP00000364509
Original member Current member EBI ENST00000650567.1 ENSP00000497158.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650567.1Link to Ensembl Protein Viewer:ENSP00000497158.1Re-query CCDS DB by Nucleotide ID:ENST00000650567Re-query CCDS DB by Protein ID:ENSP00000497158
Original member Current member NCBI NM_177995.3 NP_818931.1 Accepted alive Link to Nucleotide Sequence:NM_177995.3Link to Protein Sequence:NP_818931.1Re-query CCDS DB by Nucleotide ID:NM_177995Re-query CCDS DB by Protein ID:NP_818931Link to BLAST:NP_818931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_818931.1 754 A2A3K4-1 754 100% 0 0

Chromosomal Locations for CCDS 6707.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 94064740 94064821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94085251 94085422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94087831 94087911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94088145 94088263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94095317 94095454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94097321 94098579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94101566 94101751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94104275 94104385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94107828 94107944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2265 nt):
ATGGCTGCAGGAGTCTTGCCTCAGAATGAACAACCATATTCTACCTTGGTGAATAACAGCGAGTGTGTTG
CAAACATGAAAGGAAATTTAGAACGTCCAACACCAAAGTACACAAAAGTAGGGGAGCGTTTACGGCATGT
CATTCCTGGACACATGGCATGTTCCATGGCGTGTGGCGGTAGAGCTTGCAAGTATGAGAACCCAGCCCGC
TGGAGTGAGCAGGAGCAAGCCATTAAGGGGGTTTACTCATCCTGGGTCACTGATAATATACTGGCCATGG
CCCGCCCATCCTCTGAGCTCCTGGAGAAGTACCACATCATTGATCAGTTCCTCAGCCATGGCATAAAAAC
AATAATCAACCTCCAGCGCCCTGGTGAGCATGCTAGCTGTGGGAACCCTCTGGAACAAGAAAGTGGCTTC
ACATACCTTCCTGAGGCTTTCATGGAGGCTGGCATTTACTTCTACAATTTCGGATGGAAGGATTATGGTG
TAGCGTCTCTTACTACTATCCTAGATATGGTGAAGGTGATGACATTTGCCTTACAGGAAGGAAAAGTAGC
TATCCATTGTCATGCAGGGCTTGGTCGAACAGGTGTTTTAATAGCCTGTTACTTAGTTTTTGCAACGAGA
ATGACTGCTGACCAAGCAATTATATTTGTGCGGGCAAAGCGACCCAATTCCATACAAACCAGAGGACAGC
TCCTCTGTGTAAGGGAATTTACTCAGTTTCTAACTCCTCTCCGCAATATATTCTCTTGCTGTGATCCCAA
AGCACATGCTGTCACCTTACCTCAATATCTAATTCGCCAGCGTCATCTGCTTCATGGTTATGAGGCACGA
CTTCTGAAACACGTGCCAAAAATTATCCACCTAGTTTGCAAATTGCTGCTGGACTTAGCGGAGAACAGGC
CAGTGATGATGAAGGATGTGTCCGAAGGACCTGGTCTCTCTGCTGAAATAGAAAAGACAATGTCTGAGAT
GGTCACCATGCAGCTGGATAAAGAGTTACTGAGGCATGACAGTGATGTGTCCAACCCGCCTAACCCCACT
GCAGTGGCAGCAGATTTTGACAATCGAGGCATGATTTTCTCCAATGAGCAACAGTTTGACCCTCTTTGGA
AAAGGCGGAATGTTGAGTGCCTTCAACCCCTGACTCATCTGAAAAGGCGGCTCAGCTACAGTGACTCAGA
TTTAAAGAGGGCCGAGAACCTCCTGGAGCAAGGGGAGACTCCACAGACAGTGCCTGCCCAGATCTTGGTT
GGCCACAAGCCCAGGCAGCAGAAGCTCATAAGCCATTGTTACATCCCACAGTCTCCAGAACCAGACTTAC
ACAAGGAAGCCTTGGTTCGCAGCACACTTTCTTTCTGGAGTCAGTCAAAGTTTGGAGGCCTGGAAGGACT
CAAAGATAATGGGTCACCAATTTTCCATGGAAGGATCATTCCAAAGGAAGCACAGCAGAGTGGAGCTTTC
TCTGCAGATGTTTCAGGCTCACACAGCCCTGGGGAGCCAGTTTCACCCAGCTTTGCAAATGTCCATAAGG
ATCCAAACCCTGCTCACCAGCAAGTGTCTCACTGTCAGTGTAAAACTCATGGTGTTGGGAGCCCTGGCTC
TGTCAGGCAGAACAGCAGGACACCCCGAAGCCCTCTGGACTGTGGCTCCAGTCCCAAAGCACAGTTCTTG
GTTGAACATGAAACCCAGGACAGTAAAGATCTGTCTGAAGCAGCTTCACACTCTGCATTACAGTCTGAAT
TGAGTGCTGAGGCAAGAAGAATACTGGCGGCCAAAGCCCTAGCAAATTTAAATGAATCTGTAGAAAAGGA
GGAACTAAAAAGGAAGGTAGAAATGTGGCAGAAAGAGCTTAATTCCCGAGATGGAGCTTGGGAAAGAATA
TGTGGCGAGAGGGACCCTTTCATCCTATGCAGCTTGATGTGGTCTTGGGTGGAGCAACTGAAGGAGCCTG
TAATCACCAAAGAGGATGTGGACATGTTGGTTGACAGGCGAGCAGATGCCGCAGAAGCACTTTTTTTATT
AGAGAAGGGACAGCACCAGACTATTCTCTGCGTGTTGCACTGCATAGTGAACCTGCAGACAATTCCCGTG
GATGTGGAGGAAGCTTTCCTTGCCCATGCCATTAAGGCATTCACTAAGGTTAATTTTGATTCTGAAAATG
GACCAACAGTTTACAACACCCTGAAGAAAATATTTAAGCACACGCTGGAAGAAAAAAGAAAAATGACAAA
AGATGGCCCTAAGCCTGGCCTCTAG

Translation (754 aa):
MAAGVLPQNEQPYSTLVNNSECVANMKGNLERPTPKYTKVGERLRHVIPGHMACSMACGGRACKYENPAR
WSEQEQAIKGVYSSWVTDNILAMARPSSELLEKYHIIDQFLSHGIKTIINLQRPGEHASCGNPLEQESGF
TYLPEAFMEAGIYFYNFGWKDYGVASLTTILDMVKVMTFALQEGKVAIHCHAGLGRTGVLIACYLVFATR
MTADQAIIFVRAKRPNSIQTRGQLLCVREFTQFLTPLRNIFSCCDPKAHAVTLPQYLIRQRHLLHGYEAR
LLKHVPKIIHLVCKLLLDLAENRPVMMKDVSEGPGLSAEIEKTMSEMVTMQLDKELLRHDSDVSNPPNPT
AVAADFDNRGMIFSNEQQFDPLWKRRNVECLQPLTHLKRRLSYSDSDLKRAENLLEQGETPQTVPAQILV
GHKPRQQKLISHCYIPQSPEPDLHKEALVRSTLSFWSQSKFGGLEGLKDNGSPIFHGRIIPKEAQQSGAF
SADVSGSHSPGEPVSPSFANVHKDPNPAHQQVSHCQCKTHGVGSPGSVRQNSRTPRSPLDCGSSPKAQFL
VEHETQDSKDLSEAASHSALQSELSAEARRILAAKALANLNESVEKEELKRKVEMWQKELNSRDGAWERI
CGERDPFILCSLMWSWVEQLKEPVITKEDVDMLVDRRADAAEALFLLEKGQHQTILCVLHCIVNLQTIPV
DVEEAFLAHAIKAFTKVNFDSENGPTVYNTLKKIFKHTLEEKRKMTKDGPKPGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH