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Report for CCDS34967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34967.1 Public Homo sapiens 8 VPS28 24 110 108 CCDS HistoryNCBI Gene:51160Re-query CCDS DB by CCDS ID:34967.1Re-query CCDS DB by GeneID:51160See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34967.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377348.6 ENSP00000366565.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377348.6Link to Ensembl Protein Viewer:ENSP00000366565.2Re-query CCDS DB by Nucleotide ID:ENST00000377348Re-query CCDS DB by Protein ID:ENSP00000366565
Original member Current member EBI ENST00000529182.5 ENSP00000434556.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529182.5Link to Ensembl Protein Viewer:ENSP00000434556.1Re-query CCDS DB by Nucleotide ID:ENST00000529182Re-query CCDS DB by Protein ID:ENSP00000434556
Original member Current member NCBI NM_183057.3 NP_898880.1 Accepted alive Link to Nucleotide Sequence:NM_183057.3Link to Protein Sequence:NP_898880.1Re-query CCDS DB by Nucleotide ID:NM_183057Re-query CCDS DB by Protein ID:NP_898880Link to BLAST:NP_898880.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898880.1 233 Q9UK41-2 233 100% 0 0

Chromosomal Locations for CCDS 34967.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144423887 144424132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144424215 144424268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144424718 144424819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144424946 144425051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144425683 144425772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144426026 144426063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144426180 144426208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144426909 144426945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGTTTCATGGGATCCCAGCCACGCCGGGCATAGGAGCCCCTGGGAACAAGCCGGAGCTGTATGAGGAAG
TGAAGTTGTACAAGAACGCCCGGGAGAGGGAGAAGTACGACAACATGGCAGAGCTGTTTGCGGTGGTGAA
GACAATGCAAGCCCTGGAGAAGGCCTACATCAAGGACTGTGTCTCCCCCAGCGAGTACACTGCAGCCTGC
TCCCGGCTCCTGGTCCAATACAAAGCTGCCTTCAGGCAGGTCCAGGGCTCAGAAATCAGCTCTATTGACG
AATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTGGCCATGGAGCGGATCAAGGAGGACCGGCCCATCAC
CATCAAGGACGACAAGGGCAACCTCAACCGCTGCATCGCAGACGTGGTCTCGCTCTTCATCACGGTCATG
GACAAGCTGCGTCTGGAGATCCGCGCCATGGATGAGATCCAGCCCGACCTGCGAGAGCTGATGGAGACCA
TGCACCGCATGAGCCACCTCCCACCCGACTTTGAGGGCCGCCAGACGGTCAGCCAGTGGTGGGTGTCCCT
CCCAGCCAGGCAGAGCCCCGCAGTGCCCGAGACCCTCCCAGCCAGGCGGAGCCCCGCAGTGCCCCTGAGG
CCCTCAGCCCCCACATGCCCTGTGCTGCACTCCCAGGCTGCAGACCCTGAGCGGCATGTCGGCGTCAGAT
GA

Translation (233 aa):
MFHGIPATPGIGAPGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAAC
SRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVM
DKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWWVSLPARQSPAVPETLPARRSPAVPLR
PSAPTCPVLHSQAADPERHVGVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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