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Report for CCDS55.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55.1 Public Homo sapiens 1 KCNAB2 24 110 108 CCDS HistoryNCBI Gene:8514Re-query CCDS DB by CCDS ID:55.1Re-query CCDS DB by GeneID:8514See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000164247.5 ENSP00000164247.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000164247.5Link to Ensembl Protein Viewer:ENSP00000164247.1Re-query CCDS DB by Nucleotide ID:ENST00000164247Re-query CCDS DB by Protein ID:ENSP00000164247
Original member Current member EBI ENST00000378092.6 ENSP00000367332.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378092.6Link to Ensembl Protein Viewer:ENSP00000367332.2Re-query CCDS DB by Nucleotide ID:ENST00000378092Re-query CCDS DB by Protein ID:ENSP00000367332
Original member Current member EBI ENST00000378097.6 ENSP00000367337.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378097.6Link to Ensembl Protein Viewer:ENSP00000367337.1Re-query CCDS DB by Nucleotide ID:ENST00000378097Re-query CCDS DB by Protein ID:ENSP00000367337
Original member Current member EBI ENST00000428161.6 ENSP00000400285.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428161.6Link to Ensembl Protein Viewer:ENSP00000400285.2Re-query CCDS DB by Nucleotide ID:ENST00000428161Re-query CCDS DB by Protein ID:ENSP00000400285
Original member Current member EBI ENST00000671676.1 ENSP00000499496.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000671676.1Link to Ensembl Protein Viewer:ENSP00000499496.1Re-query CCDS DB by Nucleotide ID:ENST00000671676Re-query CCDS DB by Protein ID:ENSP00000499496
Original member Current member NCBI NM_001199860.2 NP_001186789.1 Accepted alive Link to Nucleotide Sequence:NM_001199860.2Link to Protein Sequence:NP_001186789.1Re-query CCDS DB by Nucleotide ID:NM_001199860Re-query CCDS DB by Protein ID:NP_001186789Link to BLAST:NP_001186789.1
Original member Current member NCBI NM_001199861.2 NP_001186790.1 Accepted alive Link to Nucleotide Sequence:NM_001199861.2Link to Protein Sequence:NP_001186790.1Re-query CCDS DB by Nucleotide ID:NM_001199861Re-query CCDS DB by Protein ID:NP_001186790Link to BLAST:NP_001186790.1
Original member Current member NCBI NM_003636.4 NP_003627.1 Accepted alive Link to Nucleotide Sequence:NM_003636.4Link to Protein Sequence:NP_003627.1Re-query CCDS DB by Nucleotide ID:NM_003636Re-query CCDS DB by Protein ID:NP_003627Link to BLAST:NP_003627.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186789.1 367 Q13303-1 367 100% 0 0
NP_001186790.1 367 Q13303-1 367 100% 0 0
NP_003627.1 367 Q13303-1 367 100% 0 0

Chromosomal Locations for CCDS 55.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6040569 6040645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6041831 6041872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6072755 6072798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6073733 6073770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6082195 6082274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6085204 6085248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6087467 6087511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6089008 6089051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6090389 6090475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6094400 6094485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6095323 6095443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6095530 6095624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6096636 6096756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6097269 6097357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6098485 6098574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGTATCCAGAATCAACGACGGGCTCCCCGGCTCGGCTCTCGCTGCGGCAGACGGGCTCCCCCGGGATGA
TCTACAGTACTCGGTATGGGAGTCCCAAAAGACAGCTCCAGTTTTACAGGAACCTGGGCAAGTCTGGCCT
GCGGGTCTCCTGCCTGGGACTTGGAACATGGGTGACCTTCGGAGGCCAGATCACCGATGAGATGGCAGAG
CAGCTCATGACCTTGGCCTATGATAATGGCATCAACCTCTTCGATACAGCAGAAGTCTACGCAGCCGGCA
AGGCTGAAGTGGTACTGGGAAACATCATTAAGAAGAAAGGATGGAGGCGGTCCAGCCTCGTCATCACCAC
CAAGATCTTCTGGGGCGGAAAGGCGGAGACGGAGCGGGGCCTGTCCAGGAAGCACATAATCGAAGGTCTG
AAAGCTTCCCTGGAGCGACTGCAGCTGGAGTACGTGGATGTGGTGTTTGCCAACCGCCCGGACCCCAACA
CCCCGATGGAAGAGACCGTCCGCGCCATGACCCACGTCATCAACCAGGGGATGGCCATGTACTGGGGCAC
GTCACGCTGGAGCTCCATGGAGATCATGGAGGCCTACTCCGTGGCCCGGCAGTTCAACCTGACCCCGCCC
ATCTGCGAGCAGGCTGAGTACCACATGTTCCAGCGTGAGAAAGTGGAGGTGCAGCTGCCGGAGCTGTTCC
ACAAGATAGGAGTGGGCGCCATGACCTGGTCCCCTCTGGCCTGTGGCATTGTTTCTGGCAAGTACGACAG
TGGCATCCCACCCTACTCAAGAGCCTCCTTGAAGGGCTACCAGTGGCTGAAGGACAAGATCCTCAGTGAG
GAGGGCCGGCGCCAGCAAGCCAAGCTGAAGGAGCTGCAGGCCATCGCCGAGCGCCTGGGCTGCACCCTGC
CCCAGCTGGCCATAGCCTGGTGCCTGAGGAATGAGGGAGTCAGCTCCGTGCTCCTGGGGGCCTCCAATGC
GGACCAGCTCATGGAGAACATTGGGGCAATACAGGTCCTTCCGAAACTGTCATCTTCCATTATCCACGAG
ATTGATAGTATTTTGGGCAATAAACCCTACAGCAAAAAGGACTACAGATCCTAA

Translation (367 aa):
MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAE
QLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGL
KASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPP
ICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSE
EGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHE
IDSILGNKPYSKKDYRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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