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Report for CCDS12688.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12688.2 Public Homo sapiens 19 DACT3 24 110 108 CCDS HistoryNCBI Gene:147906Re-query CCDS DB by CCDS ID:12688.2Re-query CCDS DB by GeneID:147906See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12688.1
The coding region has been updated to extend the N-terminus to one that is more supported by available homology data. There are no full-length transcripts representing the splice pattern of this update in human, but it is supported by human ESTs that tile across the gene, by the mouse ortholog NM_001081655.1 (CCDS39788.1), and by experimental data in PMID:18538736.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12688.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391916.7 ENSP00000375783.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391916.7Link to Ensembl Protein Viewer:ENSP00000375783.2Re-query CCDS DB by Nucleotide ID:ENST00000391916Re-query CCDS DB by Protein ID:ENSP00000375783
Original member Current member NCBI NM_145056.3 NP_659493.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145056.3Link to Protein Sequence:NP_659493.2Re-query CCDS DB by Nucleotide ID:NM_145056Re-query CCDS DB by Protein ID:NP_659493Link to BLAST:NP_659493.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659493.2 629 Q96B18 629 100% 0 0

Chromosomal Locations for CCDS 12688.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46648482 46649872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46652660 46652812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46652979 46653075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46660816 46661064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGATCCGGGCCTTCTCGTTCCCGGTGAGCCCTGAGCGGGGCCGGCTGCGGGGCTGGCTGGAGGGTAGCC
TGGCCGGGCTCTGCGAGTTACATTGGCTCCGGGAGAGGCAGGAGTACCGCGTGCAGCAGGCGCTGCGGCT
GGCCCAGCCCGGAATGGGGGGCGCCGAGGCCGAGGACGAGGAGGACGCCGATGAGGATGAAGATGCGGCG
GCGGCGCGCCGGGCCGCAGCGGCCCTGGAGGAGCAGCTGGAGGCCCTGCCTGGTCTCGTCTGGGACCTGG
GACAGCAGCTGGGAGACCTGAGCCTGGAGTCTGGGGGCCTGGAACAGGAGAGCGGGCGTAGCTCGGGCTT
CTATGAAGATCCCAGCTCTACAGGAGGTCCAGATTCACCACCCTCAACCTTCTGTGGGGACAGTGGCTTC
TCTGGATCCAGCTCCTATGGTCGCCTGGGTCCCTCTGAGCCCCGGGGCATCTATGCCAGTGAGAGGCCCA
AGTCCCTAGGAGACGCCAGTCCCAGCGCTCCGGAGGTGGTGGGCGCGCGGGCAGCGGTGCCGCGGTCCTT
CTCAGCGCCCTACCCGACGGCAGGGGGGTCCGCCGGCCCGGAGGCCTGCTCCTCGGCGGAGCGGCGGGCC
CGCGCCGGGCCCTTTCTGACGCCCAGCCCCCTGCACGCCGTGGCGATGCGCAGCCCGCGGCCCTGCGGCC
GCCCTCCCACCGACTCGCCCGACGCGGGGGGCGCAGGGCGGCCCCTGGACGGCTACATCTCGGCGCTCCT
GCGCAGGCGCCGCCGCCGGGGGGCGGGCCAGCCCCGGACCAGTCCCGGGGGCGCGGACGGCGGCCCGCGG
CGCCAGAACAGCGTGCGCCAGCGGCCGCCCGACGCGTCTCCGTCCCCCGGCAGCGCGCGACCCGCGCGGG
AGCCCTCGTTGGAGCGCGTCGGGGGCCACCCCACCAGCCCTGCCGCCTTGAGCCGCGCCTGGGCGTCGTC
GTGGGAGTCGGAGGCGGCACCCGAGCCCGCTGCGCCGCCCGCCGCCCCCTCACCCCCCGACAGCCCGGCT
GAGGGCCGCTTGGTGAAGGCGCAGTACATCCCGGGCGCGCAGGCGGCCACCCGAGGCCTCCCTGGCCGCG
CCGCCCGCCGCAAACCGCCGCCACTGACCCGCGGCCGCAGCGTGGAGCAGTCACCACCCCGGGAGCGTCC
CCGGGCCGCCGGCCGCCGTGGACGCATGGCCGAGGCTTCGGGCCGCCGCGGCTCGCCCAGGGCCCGCAAG
GCCTCGCGCTCCCAGTCTGAGACCAGCCTGCTGGGCCGCGCCTCCGCGGTCCCTTCGGGGCCCCCTAAGT
ACCCCACGGCGGAGCGGGAAGAGCCTCGGCCTCCACGGCCACGCCGCGGCCCAGCGCCCACGCTGGCGGC
CCAGGCCGCAGGGTCCTGCCGTCGCTGGCGCTCCACTGCGGAGATCGACGCTGCCGATGGGCGCCGCGTG
CGGCCCCGAGCCCCTGCGGCGCGTGTTCCCGGCCCCGGCCCGTCCCCGTCAGCTCCCCAGCGTCGTCTGC
TTTACGGCTGCGCGGGCAGCGACTCCGAGTGCTCGGCTGGGCGCCTGGGGCCCCTGGGACGCCGGGGGCC
TGCGGGAGGCGTCGGCGGGGGTTACGGGGAGAGCGAATCGAGCGCCAGCGAGGGAGAATCGCCTGCCTTC
AGCTCTGCCTCCAGCGACTCAGACGGCAGCGGTGGCCTCGTGTGGCCGCAGCAGCTGGTGGCGGCCACCG
CGGCCTCTGGGGGTGGAGCAGGTGCAGGGGCGCCCGCAGGCCCCGCCAAAGTCTTCGTGAAAATCAAAGC
TTCCCACGCGCTCAAGAAAAAGATACTGCGTTTCCGTTCGGGTTCTCTCAAGGTCATGACTACAGTGTGA

Translation (629 aa):
MIRAFSFPVSPERGRLRGWLEGSLAGLCELHWLRERQEYRVQQALRLAQPGMGGAEAEDEEDADEDEDAA
AARRAAAALEEQLEALPGLVWDLGQQLGDLSLESGGLEQESGRSSGFYEDPSSTGGPDSPPSTFCGDSGF
SGSSSYGRLGPSEPRGIYASERPKSLGDASPSAPEVVGARAAVPRSFSAPYPTAGGSAGPEACSSAERRA
RAGPFLTPSPLHAVAMRSPRPCGRPPTDSPDAGGAGRPLDGYISALLRRRRRRGAGQPRTSPGGADGGPR
RQNSVRQRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRAWASSWESEAAPEPAAPPAAPSPPDSPA
EGRLVKAQYIPGAQAATRGLPGRAARRKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARK
ASRSQSETSLLGRASAVPSGPPKYPTAEREEPRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRV
RPRAPAARVPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRGPAGGVGGGYGESESSASEGESPAF
SSASSDSDGSGGLVWPQQLVAATAASGGGAGAGAPAGPAKVFVKIKASHALKKKILRFRSGSLKVMTTV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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