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Report for CCDS63108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63108.1 Public Homo sapiens 2 RPE 24 110 108 CCDS HistoryNCBI Gene:6120Re-query CCDS DB by CCDS ID:63108.1Re-query CCDS DB by GeneID:6120See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63108.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000411934.6 ENSP00000389411.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411934.6Link to Ensembl Protein Viewer:ENSP00000389411.1Re-query CCDS DB by Nucleotide ID:ENST00000411934Re-query CCDS DB by Protein ID:ENSP00000389411
Original member Current member EBI ENST00000438204.6 ENSP00000402061.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438204.6Link to Ensembl Protein Viewer:ENSP00000402061.1Re-query CCDS DB by Nucleotide ID:ENST00000438204Re-query CCDS DB by Protein ID:ENSP00000402061
Original member Current member NCBI NM_001278286.2 NP_001265215.1 Accepted alive Link to Nucleotide Sequence:NM_001278286.2Link to Protein Sequence:NP_001265215.1Re-query CCDS DB by Nucleotide ID:NM_001278286Re-query CCDS DB by Protein ID:NP_001265215Link to BLAST:NP_001265215.1
Original member Current member NCBI NM_001278288.2 NP_001265217.1 Accepted alive Link to Nucleotide Sequence:NM_001278288.2Link to Protein Sequence:NP_001265217.1Re-query CCDS DB by Nucleotide ID:NM_001278288Re-query CCDS DB by Protein ID:NP_001265217Link to BLAST:NP_001265217.1
Original member Current member NCBI NM_001318930.2 NP_001305859.1 Accepted alive Link to Nucleotide Sequence:NM_001318930.2Link to Protein Sequence:NP_001305859.1Re-query CCDS DB by Nucleotide ID:NM_001318930Re-query CCDS DB by Protein ID:NP_001305859Link to BLAST:NP_001305859.1
Original member Current member NCBI NM_001318931.2 NP_001305860.1 Accepted alive Link to Nucleotide Sequence:NM_001318931.2Link to Protein Sequence:NP_001305860.1Re-query CCDS DB by Nucleotide ID:NM_001318931Re-query CCDS DB by Protein ID:NP_001305860Link to BLAST:NP_001305860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265215.1 160 Q96AT9-5 160 100% 0 0
NP_001265217.1 160 Q96AT9-5 160 100% 0 0
NP_001305859.1 160 Q96AT9-5 160 100% 0 0
NP_001305860.1 160 Q96AT9-5 160 100% 0 0

Chromosomal Locations for CCDS 63108.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 210015975 210016112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210016507 210016641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210017473 210017559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 210019669 210019791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGCACATGATGGTGTCCAAGCCAGAACAGTGGGTAAAGCCAATGGCTGTAGCAGGAGCCAATCAGTACA
CCTTTCATCTCGAGGCTACTGAGAACCCAGGGGCTTTGATTAAAGACATTCGGGAGAATGGGATGAAGGT
TGGCCTTGCCATCAAACCAGGAACCTCAGTTGAGTATTTGGCACCATGGGCTAATCAGATAGATATGGCC
TTGGTTATGACAGTGGAACCGGGGTTTGGAGGGCAGAAATTCATGGAAGATATGATGCCAAAGGTTCACT
GGTTGAGGACCCAGTTCCCATCTTTGGATATAGAGGTCGATGGTGGAGTAGGTCCTGACACTGTCCATAA
ATGTGCAGAGGCAGGAGCTAACATGATTGTGTCTGGCAGTGCTATTATGAGGAGTGAAGACCCCAGATCT
GTGATCAATCTATTAAGAAATGTTTGCTCAGAAGCTGCTCAGAAACGTTCTCTTGATCGGTGA

Translation (160 aa):
MHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMA
LVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRS
VINLLRNVCSEAAQKRSLDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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