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Report for CCDS55883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55883.1 Public Homo sapiens 12 ALKBH2 24 110 108 CCDS HistoryNCBI Gene:121642Re-query CCDS DB by CCDS ID:55883.1Re-query CCDS DB by GeneID:121642See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55883.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440112.2 ENSP00000399820.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440112.2Link to Ensembl Protein Viewer:ENSP00000399820.2Re-query CCDS DB by Nucleotide ID:ENST00000440112Re-query CCDS DB by Protein ID:ENSP00000399820
Original member Current member EBI ENST00000619381.4 ENSP00000478765.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619381.4Link to Ensembl Protein Viewer:ENSP00000478765.1Re-query CCDS DB by Nucleotide ID:ENST00000619381Re-query CCDS DB by Protein ID:ENSP00000478765
Original member Current member NCBI NM_001205179.2 NP_001192108.1 Accepted alive Link to Nucleotide Sequence:NM_001205179.2Link to Protein Sequence:NP_001192108.1Re-query CCDS DB by Nucleotide ID:NM_001205179Re-query CCDS DB by Protein ID:NP_001192108Link to BLAST:NP_001192108.1
Original member Current member NCBI NM_001205180.2 NP_001192109.1 Accepted alive Link to Nucleotide Sequence:NM_001205180.2Link to Protein Sequence:NP_001192109.1Re-query CCDS DB by Nucleotide ID:NM_001205180Re-query CCDS DB by Protein ID:NP_001192109Link to BLAST:NP_001192109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192108.1 157 Q6NS38-2 157 100% 0 0
NP_001192109.1 157 Q6NS38-2 157 100% 0 0

Chromosomal Locations for CCDS 55883.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 109088319 109088512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109092507 109092786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGGACAGATTCCTGGTGAAAGGGGCTCAAGGGGGCCTTTTGAGGAAGCAGGAGGAGCAAGAGCCAACTG
GAGAAGAGCCAGCTGTGTTGGGAGGAGACAAAGAAAGCACAAGGAAGAGGCCCAGGAGAGAGGCCCCAGG
GAATGGAGGCCACTCAGCAGGCCCTAGCTGGCGGCACATTCGGGCTGAGGGCCTGGACTGCAGTTACACA
GTCCTGTTTGGCAAAGCTGAGGCAGATGAGATTTTCCAAGAGTTGGAGAAAGAAGTAGAATATTTTACAG
GTATAAAGATGGCTGTGACCACATCGGGGAGCACCGAGATGATGAAAGAGAACTGGCCCCTGGGAGCCCC
ATTGCCTCTGTCTCCTTCGGTGCCTGCAGAGACTTTGTCTTCCGGCATAAGGATTCCCGTGGGAAAAGCC
CCTCCAGGAGGGTGGCGGTGGTCAGGCTGCCGCTGGCCCACGGGAGCTTACTAA

Translation (157 aa):
MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYT
VLFGKAEADEIFQELEKEVEYFTGIKMAVTTSGSTEMMKENWPLGAPLPLSPSVPAETLSSGIRIPVGKA
PPGGWRWSGCRWPTGAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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