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Report for CCDS34677.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34677.2 Public Homo sapiens 7 ELAPOR2 24 110 108 CCDS HistoryNCBI Gene:222223Re-query CCDS DB by CCDS ID:34677.2Re-query CCDS DB by GeneID:222223See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 34677.1
The coding region has been updated to represent an alternative splicing pattern that is more likely to encode a protein, and is supported by the available transcript data. The previous representation contained upstream ORFs that are likely to inhibit the translation of the protein.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 34677.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000416314.5 ENSP00000402390.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416314.5Link to Ensembl Protein Viewer:ENSP00000402390.1Re-query CCDS DB by Nucleotide ID:ENST00000416314Re-query CCDS DB by Protein ID:ENSP00000402390
Original member Current member NCBI NM_152748.4 NP_689961.3 Accepted alive Link to Nucleotide Sequence:NM_152748.4Link to Protein Sequence:NP_689961.3Re-query CCDS DB by Nucleotide ID:NM_152748Re-query CCDS DB by Protein ID:NP_689961Link to BLAST:NP_689961.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689961.3 862 A8MWY0-3 862 100% 0 0

Chromosomal Locations for CCDS 34677.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 86880471 86880530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86891724 86891889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86892922 86893100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86897506 86897632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86907670 86907771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86908447 86908543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86909812 86910001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86912072 86912245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86912941 86913204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86914723 86914860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86918442 86918544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86919220 86919310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86925528 86925656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86926736 86926916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86938126 86938214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86938808 86938960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86940010 86940115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86942018 86942104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86944899 86945046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 86964904 86964908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2589 nt):
ATGCACTCTTCTTGGATCCCTCGTGGAAACTACATAGAATCTAATCGTGATGACTGCACGGTGTCTTTGA
TCTATGCTGTGCACCTTAAGAAGTCAGGCTATGTCTTCTTTGAGTACCAGTATGTCGACAACAACATCTT
CTTTGAGTTCTTTATTCAAAATGATCAGTGCCAGGAGATGGACACCACCACTGACAAGTGGGTAAAACTT
ACAGACAATGGAGAATGGGGCTCTCATTCTGTAATGCTGAAATCAGGCACAAACATACTCTACTGGAGAA
CTACAGGCATCCTTATGGGTTCTAAGGCGGTCAAGCCTGTGCTGGTAAAAAATATCACAATTGAAGGGGT
GGCGTACACATCAGAATGTTTTCCTTGCAAGCCAGGCACATTCAGCAACAAACCAGGTTCATTCAACTGC
CAGGTGTGTCCCAGAAACACCTATTCTGAGAAAGGAGCCAAAGAATGTATAAGGTGTAAAGACGACTCTC
AATTTTCAGAGGAAGGATCCAGTGAGTGTACAGAGCGCCCTCCCTGTACCACAAAAGACTATTTCCAGAT
CCATACTCCATGTGATGAAGAAGGAAAGACACAGATAATGTACAAGTGGATAGAGCCCAAAATCTGCCGG
GAGGATCTCACAGATGCTATTAGATTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCGCCTTGCAACCCTG
GATTTTATAACAATGGATCATCTTCTTGCCATCCCTGTCCTCCTGGAACATTTTCAGATGGAACCAAAGA
ATGTAGACCATGTCCAGCAGGAACGGAGCCTGCACTTGGCTTTGAATATAAATGGTGGAATGTCCTTCCT
GGCAACATGAAAACTTCCTGCTTCAATGTTGGGAATTCAAAGTGCGATGGAATGAATGGTTGGGAGGTGG
CTGGAGATCATATCCAGAGTGGGGCTGGAGGTTCTGACAATGATTACCTGATCTTAAACTTGCATATCCC
AGGATTTAAACCACCAACATCTATGACTGGAGCCACGGGTTCTGAACTAGGAAGAATAACATTTGTCTTT
GAGACCCTCTGTTCAGCTGACTGTGTTTTGTACTTCATGGTGGATATTAATAGAAAAAGTACAAATGTGG
TAGAATCGTGGGGTGGAACCAAAGAAAAACAAGCTTACACCCATATCATCTTCAAGAATGCAACTTTTAC
ATTTACATGGGCATTCCAGAGAACTAATCAGGGTCAAGATAATAGACGGTTCATCAATGACATGGTGAAG
ATTTATTCTATCACAGCCACTAATGCAGTTGATGGGGTGGCGTCCTCATGCCGTGCCTGTGCCCTCGGTT
CTGAACAGTCGGGTTCATCGTGTGTCCCCTGCCCTCCAGGCCACTACATTGAGAAAGAAACCAACCAGTG
CAAGGAATGTCCACCTGACACCTACCTGTCCATACATCAGGTCTATGGCAAAGAGGCTTGTATTCCATGC
GGGCCTGGGAGTAAAAACAATCAGGACCATTCGGTTTGCTATAGTGACTGCTTTTTCTACCATGAAAAAG
AAAATCAGAGTTTGCACTATGACTTTAGCAACCTCAGCAGTGTGGGCTCATTAATGAATGGCCCCAGCTT
CACCTCCAAAGGAACAAAATACTTCCATTTCTTCAATATCAGTTTATGTGGGCATGAGGGGAAGAAGATG
GCTCTCTGTACCAACAATATAACAGACTTTACAGTAAAAGAAATAGTGGCAGGGTCAGATGATTACACAA
ATTTGGTAGGGGCATTTGTATGCCAGTCAACAATTATTCCTTCTGAAAGTAAGGGTTTCCGAGCAGCCTT
ATCATCACAATCCATCATTCTGGCAGATACATTCATAGGAGTCACAGTTGAAACCACATTGAAAAATATT
AATATAAAAGAAGATATGTTCCCAGTTCCAACAAGCCAAATACCAGATGTGCATTTCTTTTATAAGTCTT
CTACAGCAACAACATCTTGTATTAATGGCCGATCAACTGCTGTGAAAATGAGGTGTAATCCTACTAAATC
TGGAGCAGGAGTGATTTCAGTCCCCAGCAAGTGCCCAGCAGGTACCTGTGATGGGTGTACGTTCTATTTC
CTGTGGGAGAGTGCTGAAGCTTGCCCTCTGTGTACGGAGCATGACTTCCATGAGATTGAGGGAGCCTGCA
AGAGAGGATTTCAGGAAACCTTGTATGTGTGGAATGAACCTAAATGGTGCATTAAAGGAATTTCTTTGCC
TGAGAAAAAGTTGGCAACCTGTGAAACGGTTGACTTTTGGCTGAAGGTGGGAGCCGGTGTGGGAGCTTTT
ACTGCCGTTTTGCTGGTGGCTCTGACCTGCTACTTCTGGAAAAAGAATCAAAAACTGGAATACAAATATT
CCAAGTTAGTAATGACGACTAACTCAAAAGAGTGTGAACTCCCGGCTGCAGACAGTTGTGCTATCATGGA
AGGAGAAGATAATGAAGAGGAAGTTGTATATTCCAATAAACAGTCACTACTAGGAAAACTCAAATCTTTG
GCAACCAAGGAAAAAGAAGACCATTTTGAATCTGTTCAACTGAAAACCTCAAGATCCCCAAATATATGA

Translation (862 aa):
MHSSWIPRGNYIESNRDDCTVSLIYAVHLKKSGYVFFEYQYVDNNIFFEFFIQNDQCQEMDTTTDKWVKL
TDNGEWGSHSVMLKSGTNILYWRTTGILMGSKAVKPVLVKNITIEGVAYTSECFPCKPGTFSNKPGSFNC
QVCPRNTYSEKGAKECIRCKDDSQFSEEGSSECTERPPCTTKDYFQIHTPCDEEGKTQIMYKWIEPKICR
EDLTDAIRLPPSGEKKDCPPCNPGFYNNGSSSCHPCPPGTFSDGTKECRPCPAGTEPALGFEYKWWNVLP
GNMKTSCFNVGNSKCDGMNGWEVAGDHIQSGAGGSDNDYLILNLHIPGFKPPTSMTGATGSELGRITFVF
ETLCSADCVLYFMVDINRKSTNVVESWGGTKEKQAYTHIIFKNATFTFTWAFQRTNQGQDNRRFINDMVK
IYSITATNAVDGVASSCRACALGSEQSGSSCVPCPPGHYIEKETNQCKECPPDTYLSIHQVYGKEACIPC
GPGSKNNQDHSVCYSDCFFYHEKENQSLHYDFSNLSSVGSLMNGPSFTSKGTKYFHFFNISLCGHEGKKM
ALCTNNITDFTVKEIVAGSDDYTNLVGAFVCQSTIIPSESKGFRAALSSQSIILADTFIGVTVETTLKNI
NIKEDMFPVPTSQIPDVHFFYKSSTATTSCINGRSTAVKMRCNPTKSGAGVISVPSKCPAGTCDGCTFYF
LWESAEACPLCTEHDFHEIEGACKRGFQETLYVWNEPKWCIKGISLPEKKLATCETVDFWLKVGAGVGAF
TAVLLVALTCYFWKKNQKLEYKYSKLVMTTNSKECELPAADSCAIMEGEDNEEEVVYSNKQSLLGKLKSL
ATKEKEDHFESVQLKTSRSPNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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