NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2644.1 Public Homo sapiens 3 LRRC3B 24 110 108 CCDS HistoryNCBI Gene:116135Re-query CCDS DB by CCDS ID:2644.1Re-query CCDS DB by GeneID:116135See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2644.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396641.7 ENSP00000379880.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396641.7Link to Ensembl Protein Viewer:ENSP00000379880.2Re-query CCDS DB by Nucleotide ID:ENST00000396641Re-query CCDS DB by Protein ID:ENSP00000379880
Original member Current member EBI ENST00000456208.2 ENSP00000394940.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456208.2Link to Ensembl Protein Viewer:ENSP00000394940.2Re-query CCDS DB by Nucleotide ID:ENST00000456208Re-query CCDS DB by Protein ID:ENSP00000394940
Original member Current member EBI ENST00000417744.5 ENSP00000406370.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417744.5Link to Ensembl Protein Viewer:ENSP00000406370.1Re-query CCDS DB by Nucleotide ID:ENST00000417744Re-query CCDS DB by Protein ID:ENSP00000406370
Original member Current member EBI ENST00000648296.1 ENSP00000497471.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648296.1Link to Ensembl Protein Viewer:ENSP00000497471.1Re-query CCDS DB by Nucleotide ID:ENST00000648296Re-query CCDS DB by Protein ID:ENSP00000497471
Original member Current member NCBI NM_001317808.2 NP_001304737.1 Accepted alive Link to Nucleotide Sequence:NM_001317808.2Link to Protein Sequence:NP_001304737.1Re-query CCDS DB by Nucleotide ID:NM_001317808Re-query CCDS DB by Protein ID:NP_001304737Link to BLAST:NP_001304737.1
Original member Current member NCBI NM_001317809.2 NP_001304738.1 Accepted alive Link to Nucleotide Sequence:NM_001317809.2Link to Protein Sequence:NP_001304738.1Re-query CCDS DB by Nucleotide ID:NM_001317809Re-query CCDS DB by Protein ID:NP_001304738Link to BLAST:NP_001304738.1
Original member Current member NCBI NM_001317810.3 NP_001304739.1 Accepted alive Link to Nucleotide Sequence:NM_001317810.3Link to Protein Sequence:NP_001304739.1Re-query CCDS DB by Nucleotide ID:NM_001317810Re-query CCDS DB by Protein ID:NP_001304739Link to BLAST:NP_001304739.1
Original member Current member NCBI NM_001317811.2 NP_001304740.1 Accepted alive Link to Nucleotide Sequence:NM_001317811.2Link to Protein Sequence:NP_001304740.1Re-query CCDS DB by Nucleotide ID:NM_001317811Re-query CCDS DB by Protein ID:NP_001304740Link to BLAST:NP_001304740.1
Original member Current member NCBI NM_001395645.1 NP_001382574.1 Accepted alive Link to Nucleotide Sequence:NM_001395645.1Link to Protein Sequence:NP_001382574.1Re-query CCDS DB by Nucleotide ID:NM_001395645Re-query CCDS DB by Protein ID:NP_001382574Link to BLAST:NP_001382574.1
Original member Current member NCBI NM_001395646.1 NP_001382575.1 Accepted alive Link to Nucleotide Sequence:NM_001395646.1Link to Protein Sequence:NP_001382575.1Re-query CCDS DB by Nucleotide ID:NM_001395646Re-query CCDS DB by Protein ID:NP_001382575Link to BLAST:NP_001382575.1
Original member Current member NCBI NM_001395647.1 NP_001382576.1 Accepted alive Link to Nucleotide Sequence:NM_001395647.1Link to Protein Sequence:NP_001382576.1Re-query CCDS DB by Nucleotide ID:NM_001395647Re-query CCDS DB by Protein ID:NP_001382576Link to BLAST:NP_001382576.1
Original member Current member NCBI NM_052953.4 NP_443185.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052953.4Link to Protein Sequence:NP_443185.1Re-query CCDS DB by Nucleotide ID:NM_052953Re-query CCDS DB by Protein ID:NP_443185Link to BLAST:NP_443185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304737.1 259 Q96PB8 259 100% 0 0
NP_001304738.1 259 Q96PB8 259 100% 0 0
NP_001304739.1 259 Q96PB8 259 100% 0 0
NP_001304740.1 259 Q96PB8 259 100% 0 0
NP_001382574.1 259 Q96PB8 259 100% 0 0
NP_001382575.1 259 Q96PB8 259 100% 0 0
NP_001382576.1 259 Q96PB8 259 100% 0 0
NP_443185.1 259 Q96PB8 259 100% 0 0

Chromosomal Locations for CCDS 2644.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 26709673 26710452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGAATCTGGTAGACCTGTGGTTAACCCGTTCCCTCTCCATGTGTCTCCTCCTACAAAGTTTTGTTCTTA
TGATACTGTGCTTTCATTCTGCCAGTATGTGTCCCAAGGGCTGTCTTTGTTCTTCCTCTGGGGGTTTAAA
TGTCACCTGTAGCAATGCAAATCTCAAGGAAATACCTAGAGATCTTCCTCCTGAAACAGTCTTACTGTAT
CTGGACTCCAATCAGATCACATCTATTCCCAATGAAATTTTTAAGGACCTCCATCAACTGAGAGTTCTCA
ACCTGTCCAAAAATGGCATTGAGTTTATCGATGAGCATGCCTTCAAAGGAGTAGCTGAAACCTTGCAGAC
TCTGGACTTGTCCGACAATCGGATTCAAAGTGTGCACAAAAATGCCTTCAATAACCTGAAGGCCAGGGCC
AGAATTGCCAACAACCCCTGGCACTGCGACTGTACTCTACAGCAAGTTCTGAGGAGCATGGCGTCCAATC
ATGAGACAGCCCACAACGTGATCTGTAAAACGTCCGTGTTGGATGAACATGCTGGCAGACCATTCCTCAA
TGCTGCCAACGACGCTGACCTTTGTAACCTCCCTAAAAAAACTACCGATTATGCCATGCTGGTCACCATG
TTTGGCTGGTTCACTATGGTGATCTCATATGTGGTATATTATGTGAGGCAAAATCAGGAGGATGCCCGGA
GACACCTCGAATACTTGAAATCCCTGCCAAGCAGGCAGAAGAAAGCAGATGAACCTGATGATATTAGCAC
TGTGGTATAG

Translation (259 aa):
MNLVDLWLTRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSSSGGLNVTCSNANLKEIPRDLPPETVLLY
LDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDLSDNRIQSVHKNAFNNLKARA
RIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLDEHAGRPFLNAANDADLCNLPKKTTDYAMLVTM
FGWFTMVISYVVYYVRQNQEDARRHLEYLKSLPSRQKKADEPDDISTVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH