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Report for CCDS4824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4824.1 Public Homo sapiens 6 CDKN1A 24 110 108 CCDS HistoryNCBI Gene:1026Re-query CCDS DB by CCDS ID:4824.1Re-query CCDS DB by GeneID:1026See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 4824.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244741.10 ENSP00000244741.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000244741.10Link to Ensembl Protein Viewer:ENSP00000244741.6Re-query CCDS DB by Nucleotide ID:ENST00000244741Re-query CCDS DB by Protein ID:ENSP00000244741
Original member Current member EBI ENST00000373711.3 ENSP00000362815.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373711.3Link to Ensembl Protein Viewer:ENSP00000362815.1Re-query CCDS DB by Nucleotide ID:ENST00000373711Re-query CCDS DB by Protein ID:ENSP00000362815
Original member Current member EBI ENST00000405375.5 ENSP00000384849.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405375.5Link to Ensembl Protein Viewer:ENSP00000384849.1Re-query CCDS DB by Nucleotide ID:ENST00000405375Re-query CCDS DB by Protein ID:ENSP00000384849
Original member Current member EBI ENST00000448526.6 ENSP00000409259.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448526.6Link to Ensembl Protein Viewer:ENSP00000409259.3Re-query CCDS DB by Nucleotide ID:ENST00000448526Re-query CCDS DB by Protein ID:ENSP00000409259
Original member Current member EBI ENST00000615513.4 ENSP00000482768.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615513.4Link to Ensembl Protein Viewer:ENSP00000482768.1Re-query CCDS DB by Nucleotide ID:ENST00000615513Re-query CCDS DB by Protein ID:ENSP00000482768
Original member Current member NCBI NM_000389.5 NP_000380.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000389.5Link to Protein Sequence:NP_000380.1Re-query CCDS DB by Nucleotide ID:NM_000389Re-query CCDS DB by Protein ID:NP_000380Link to BLAST:NP_000380.1
Original member Current member NCBI NM_001220777.2 NP_001207706.1 Accepted alive Link to Nucleotide Sequence:NM_001220777.2Link to Protein Sequence:NP_001207706.1Re-query CCDS DB by Nucleotide ID:NM_001220777Re-query CCDS DB by Protein ID:NP_001207706Link to BLAST:NP_001207706.1
Original member Current member NCBI NM_001220778.2 NP_001207707.1 Accepted alive Link to Nucleotide Sequence:NM_001220778.2Link to Protein Sequence:NP_001207707.1Re-query CCDS DB by Nucleotide ID:NM_001220778Re-query CCDS DB by Protein ID:NP_001207707Link to BLAST:NP_001207707.1
Original member Current member NCBI NM_001374513.1 NP_001361442.1 Accepted alive Link to Nucleotide Sequence:NM_001374513.1Link to Protein Sequence:NP_001361442.1Re-query CCDS DB by Nucleotide ID:NM_001374513Re-query CCDS DB by Protein ID:NP_001361442Link to BLAST:NP_001361442.1
Original member Current member NCBI NM_078467.3 NP_510867.1 Accepted alive Link to Nucleotide Sequence:NM_078467.3Link to Protein Sequence:NP_510867.1Re-query CCDS DB by Nucleotide ID:NM_078467Re-query CCDS DB by Protein ID:NP_510867Link to BLAST:NP_510867.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000380.1 164 P38936 164 100% 0 0
NP_001207706.1 164 P38936 164 100% 0 0
NP_001207707.1 164 P38936 164 100% 0 0
NP_001361442.1 164 P38936 164 100% 0 0
NP_510867.1 164 P38936 164 100% 0 0

Chromosomal Locations for CCDS 4824.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36684102 36684546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36685751 36685800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGTCAGAACCGGCTGGGGATGTCCGTCAGAACCCATGCGGCAGCAAGGCCTGCCGCCGCCTCTTCGGCC
CAGTGGACAGCGAGCAGCTGAGCCGCGACTGTGATGCGCTAATGGCGGGCTGCATCCAGGAGGCCCGTGA
GCGATGGAACTTCGACTTTGTCACCGAGACACCACTGGAGGGTGACTTCGCCTGGGAGCGTGTGCGGGGC
CTTGGCCTGCCCAAGCTCTACCTTCCCACGGGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGC
GGCCTGGCACCTCACCTGCTCTGCTGCAGGGGACAGCAGAGGAAGACCATGTGGACCTGTCACTGTCTTG
TACCCTTGTGCCTCGCTCAGGGGAGCAGGCTGAAGGGTCCCCAGGTGGACCTGGAGACTCTCAGGGTCGA
AAACGGCGGCAGACCAGCATGACAGATTTCTACCACTCCAAACGCCGGCTGATCTTCTCCAAGAGGAAGC
CCTAA

Translation (164 aa):
MSEPAGDVRQNPCGSKACRRLFGPVDSEQLSRDCDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRG
LGLPKLYLPTGPRRGRDELGGGRRPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGR
KRRQTSMTDFYHSKRRLIFSKRKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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