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Report for CCDS7532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7532.1 Public Homo sapiens 10 PITX3 24 110 108 CCDS HistoryNCBI Gene:5309Re-query CCDS DB by CCDS ID:7532.1Re-query CCDS DB by GeneID:5309See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7532.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370002.8 ENSP00000359019.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370002.8Link to Ensembl Protein Viewer:ENSP00000359019.3Re-query CCDS DB by Nucleotide ID:ENST00000370002Re-query CCDS DB by Protein ID:ENSP00000359019
Original member Current member EBI ENST00000539804.1 ENSP00000439383.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539804.1Link to Ensembl Protein Viewer:ENSP00000439383.1Re-query CCDS DB by Nucleotide ID:ENST00000539804Re-query CCDS DB by Protein ID:ENSP00000439383
Original member Current member NCBI NM_005029.4 NP_005020.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005029.4Link to Protein Sequence:NP_005020.1Re-query CCDS DB by Nucleotide ID:NM_005029Re-query CCDS DB by Protein ID:NP_005020Link to BLAST:NP_005020.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005020.1 302 O75364 302 100% 0 0

Chromosomal Locations for CCDS 7532.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 102230514 102231101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102231588 102231790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102231963 102232080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGGAGTTCGGCCTGCTCAGCGAGGCAGAGGCCCGGAGCCCTGCCCTGTCGCTGTCAGACGCTGGCACTC
CG
CACCCCCAGCTCCCAGAGCACGGCTGCAAGGGCCAGGAGCACAGCGACTCAGAAAAGGCCTCGGCTTC
G
CTGCCCGGCGGCTCCCCAGAGGACGGTTCGCTGAAAAAGAAGCAGCGGCGGCAGCGCACGCACTTCACC
AGC
CAGCAGCTACAGGAGCTAGAGGCGACCTTCCAGAGGAACCGCTACCCCGACATGAGCACGCGCGAGG
AG
ATCGCCGTGTGGACCAACCTCACCGAGGCCCGCGTGCGGGTGTGGTTCAAGAACCGGCGCGCCAAATG
G
CGGAAGCGCGAGCGCAGCCAGCAGGCCGAGCTATGCAAAGGCAGCTTCGCGGCGCCGCTCGGGGGGCTG
GTG
CCGCCCTACGAGGAGGTGTACCCCGGCTACTCGTACGGCAACTGGCCGCCCAAGGCTCTTGCCCCGC
CG
CTCGCCGCCAAGACCTTTCCATTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGCTTCGCAGCCCGT
C
TTCTCGCCACCCAGCTCCATCGCCGCCTCCATGGTGCCCTCCGCCGCGGCTGCCCCGGGCACCGTGCCA
GGG
CCTGGGGCCCTGCAGGGCCTGGGCGGGGGCCCCCCCGGGCTGGCTCCGGCCGCCGTGTCCTCCGGGG
CC
GTGTCCTGCCCTTATGCCTCGGCCGCCGCCGCCGCCGCGGCTGCCGCCTCTTCCCCCTACGTCTATCG
G
GACCCGTGTAACTCGAGCCTGGCCAGCCTGCGGCTCAAAGCCAAACAGCACGCCTCCTTCAGCTACCCC
GCT
GTGCACGGGCCGCCCCCGGCAGCCAACCTTAGTCCGTGCCAGTACGCCGTGGAAAGGCCCGTATGA


Translation (302 aa):
MEFGLLSEAEARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASASLPGGSPEDGSLKKKQRRQRTHFT
S
QQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVR
VWFKNRRAKWRKRERSQQAELCKGSFAAPLGGL
V
PPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVP
G
PGALQGLGGGPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSYP
A
VHGPPPAANLSPCQYAVERPV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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  VEGA Genome Browser