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Report for CCDS9111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9111.1 Public Homo sapiens 12 MTERF2 24 110 108 CCDS HistoryNCBI Gene:80298Re-query CCDS DB by CCDS ID:9111.1Re-query CCDS DB by GeneID:80298See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9111.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000240050.9 ENSP00000240050.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000240050.9Link to Ensembl Protein Viewer:ENSP00000240050.4Re-query CCDS DB by Nucleotide ID:ENST00000240050Re-query CCDS DB by Protein ID:ENSP00000240050
Original member Current member EBI ENST00000392830.6 ENSP00000376575.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392830.6Link to Ensembl Protein Viewer:ENSP00000376575.2Re-query CCDS DB by Nucleotide ID:ENST00000392830Re-query CCDS DB by Protein ID:ENSP00000376575
Original member Current member EBI ENST00000552029.1 ENSP00000447651.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552029.1Link to Ensembl Protein Viewer:ENSP00000447651.1Re-query CCDS DB by Nucleotide ID:ENST00000552029Re-query CCDS DB by Protein ID:ENSP00000447651
Original member Current member NCBI NM_001033050.3 NP_001028222.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001033050.3Link to Protein Sequence:NP_001028222.1Re-query CCDS DB by Nucleotide ID:NM_001033050Re-query CCDS DB by Protein ID:NP_001028222Link to BLAST:NP_001028222.1
Original member Current member NCBI NM_025198.5 NP_079474.2 Accepted alive Link to Nucleotide Sequence:NM_025198.5Link to Protein Sequence:NP_079474.2Re-query CCDS DB by Nucleotide ID:NM_025198Re-query CCDS DB by Protein ID:NP_079474Link to BLAST:NP_079474.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028222.1 385 Q49AM1 385 100% 0 0
NP_079474.2 385 Q49AM1 385 100% 0 0

Chromosomal Locations for CCDS 9111.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 106977557 106978714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGTTGTGGAAGCTGCTGCTGAGATCCCAGTCCTGCAGGCTGTGTTCTTTCAGAAAGATGCGATCACCTC
CAAAATACAGACCTTTCTTAGCATGCTTCACCTATACAACTGATAAACAGTCGAGCAAAGAAAATACAAG
AACAGTGGAAAAGCTCTATAAATGTTCAGTTGACATTAGGAAAATTCGTAGATTAAAAGGATGGGTACTT
TTAGAGGATGAAACCTATGTTGAAGAAATTGCGAATATTTTACAAGAACTAGGTGCCGATGAGACTGCTG
TAGCCAGTATTTTGGAACGCTGCCCGGAAGCAATTGTCTGTAGTCCAACCGCTGTTAACACCCAGAGAAA
ACTCTGGCAGTTGGTCTGCAAAAATGAGGAAGAGTTAATCAAGTTAATAGAGCAGTTTCCAGAATCTTTC
TTTACTATTAAAGACCAAGAGAACCAGAAGCTGAATGTTCAGTTCTTTCAAGAGTTGGGACTAAAAAATG
TGGTCATTAGCAGACTTTTGACAGCTGCACCTAATGTTTTTCATAATCCTGTTGAGAAGAATAAGCAAAT
GGTAAGAATTCTCCAAGAGAGTTATCTAGATGTAGGTGGCTCTGAGGCCAACATGAAAGTTTGGCTACTA
AAATTGTTAAGCCAAAACCCATTTATTTTGTTAAATTCTCCCACAGCTATAAAGGAAACACTAGAATTTC
TCCAGGAGCAAGGTTTCACCAGCTTTGAAATTCTCCAGCTTCTATCCAAACTCAAAGGATTTCTTTTTCA
ACTTTGCCCAAGAAGTATACAGAATAGTATTTCCTTCTCTAAAAATGCTTTTAAATGCACAGATCATGAC
CTGAAGCAATTAGTTTTGAAATGTCCTGCCCTTTTATATTATTCTGTTCCAGTTTTAGAAGAGAGAATGC
AAGGATTATTGAGAGAAGGAATTTCCATAGCTCAGATAAGAGAGACGCCAATGGTTCTTGAATTAACACC
ACAGATAGTACAGTACAGGATAAGGAAACTGAATTCCTCAGGCTACAGAATAAAGGATGGACATCTAGCA
AATCTAAATGGATCAAAAAAAGAGTTTGAAGCTAATTTTGGCAAAATTCAGGCCAAAAAAGTAAGGCCAT
TATTTAACCCTGTGGCACCATTAAATGTTGAAGAATGA

Translation (385 aa):
MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVL
LEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESF
FTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLL
KLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHD
LKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLA
NLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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