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Report for CCDS62603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62603.1 Public Homo sapiens 19 ISYNA1 24 110 108 CCDS HistoryNCBI Gene:51477Re-query CCDS DB by CCDS ID:62603.1Re-query CCDS DB by GeneID:51477See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62603.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000578963.5 ENSP00000475677.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000578963.5Link to Ensembl Protein Viewer:ENSP00000475677.1Re-query CCDS DB by Nucleotide ID:ENST00000578963Re-query CCDS DB by Protein ID:ENSP00000475677
Original member Current member NCBI NM_001253389.2 NP_001240318.1 Accepted alive Link to Nucleotide Sequence:NM_001253389.2Link to Protein Sequence:NP_001240318.1Re-query CCDS DB by Nucleotide ID:NM_001253389Re-query CCDS DB by Protein ID:NP_001240318Link to BLAST:NP_001240318.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240318.1 430 Q9NPH2-2 430 100% 0 0

Chromosomal Locations for CCDS 62603.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18434913 18435117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18435266 18435483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18435563 18435676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18435757 18435921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436032 18436247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436330 18436479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436684 18436877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18436973 18437003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGTGGCGCCCAACGACCTCGTGTTCGATGGCTGGGACATCTCGTCGCTGAACCTGGCCGAGGCGATGC
GGCGCGCGAAGGTGCTGGACTGGGGGCTGCAGGAGCAACTGTGGCCGCACATGGAGGCCCTGCGGCCCCG
GCCTTCTGTTTACATCCCCGAATTCATCGCGGCCAACCAGAGCGCGCGCGCGGACAACCTCATCCCAGGC
TCGCGTGCGCAGCAGCTGGAGCAGATCCGCAGGGACATCCGAGACTTCCGGTCTAGCGCGGGGCTGGACA
AAGTCATAGTGCTGTGGACGGCGAACACGGAGCGCTTCTGTGAGGTGATTCCAGGCCTCAACGACACAGC
CGAGAACCTGCTGCGCACCATTGAGCTCGGTCTGGAGGTGTCGCCCTCCACGCTCTTCGCCGTGGCCAGC
ATCCTGGAGGGCTGTGCCTTCCTCAATGGGTCTCCGCAGAACACCCTGGTGCCCGGAGCTCTTGAGCTCG
CGTGGCAGCACCGGGTTTTTGTGGGCGGAGATGACTTCAAGTCAGGCCAGACCAAAGTCAAGTCCGTGCT
TGTGGACTTCCTCATTGGCTCCGGCCTCAAGACCATGTCCATCGTGAGTTACAACCACCTGGGCAACAAC
GATGGGGAGAACCTATCGGCGCCATTGCAGTTCCGCTCTAAGGAGGTGTCCAAGAGCAACGTGGTGGACG
ACATGGTGCAGAGCAACCCAGTGCTCTATACGCCCGGCGAAGAGCCTGACCACTGCGTGGTCATCAAGTA
TGTGCCGTACGTGGGTGACAGCAAGCGCGCGCTGGATGAGTATACCTCGGAGCTGATGCTGGGCGGAACC
AACACACTGGTGCTGCACAACACGTGTGAGGACTCGCTGCTGGCCGCACCCATCATGCTGGACCTAGCGC
TGCTGACCGAGCTGTGCCAGCGCGTGAGCTTCTGCACTGACATGGACCCCGAGCCGCAGACCTTCCACCC
CGTGCTGTCCCTGCTCAGCTTCCTCTTCAAGGCGCCACTAGTGCCGCCCGGCAGCCCGGTGGTCAATGCG
CTTTTCCGCCAGCGCAGCTGCATCGAGAACATCCTCAGGGCCTGCGTGGGGCTCCCGCCACAGAACCACA
TGCTCCTGGAACACAAAATGGAGCGCCCAGGGCCCAGCCTCAAGCGAGTTGGACCCGTGGCTGCCACCTA
CCCTATGTTGAACAAGAAAGGACCGGTACCCGCTGCCACCAATGGCTGCACCGGTGATGCCAATGGGCAT
CTGCAAGAGGAGCCCCCAATGCCCACCACCTGA

Translation (430 aa):
MVAPNDLVFDGWDISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYIPEFIAANQSARADNLIPG
SRAQQLEQIRRDIRDFRSSAGLDKVIVLWTANTERFCEVIPGLNDTAENLLRTIELGLEVSPSTLFAVAS
ILEGCAFLNGSPQNTLVPGALELAWQHRVFVGGDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNN
DGENLSAPLQFRSKEVSKSNVVDDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGT
NTLVLHNTCEDSLLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNA
LFRQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYPMLNKKGPVPAATNGCTGDANGH
LQEEPPMPTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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