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Report for CCDS90833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90833.1 Public Homo sapiens 1 SAMD11 24 110 108 CCDS HistoryNCBI Gene:148398Re-query CCDS DB by CCDS ID:90833.1Re-query CCDS DB by GeneID:148398See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90833.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618323.5 ENSP00000480678.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618323.5Link to Ensembl Protein Viewer:ENSP00000480678.2Re-query CCDS DB by Nucleotide ID:ENST00000618323Re-query CCDS DB by Protein ID:ENSP00000480678
Original member Current member NCBI NM_001385640.1 NP_001372569.1 Accepted alive Link to Nucleotide Sequence:NM_001385640.1Link to Protein Sequence:NP_001372569.1Re-query CCDS DB by Nucleotide ID:NM_001385640Re-query CCDS DB by Protein ID:NP_001372569Link to BLAST:NP_001372569.1

Chromosomal Locations for CCDS 90833.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 924432 924948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 925922 926013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 930155 930336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 931039 931089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 935772 935896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 939040 939129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 939272 939412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 941144 941306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 942136 942251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 942410 942488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 942559 943058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 943253 943377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 943698 943808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 943908 944153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGCCGGCGGTCAAGAAGGAGTTCCCGGGCCGCGAGGACCTGGCCCTGGCTCTGGCCACGTTCCACCCGA
CCCTGGCCGCGCTGCCGCTGCCGCCGCTGCCAGGCTACCTGGCGCCACTGCCCGCGGCGGCCGCCCTCCC
CCCGGCCGCCTCGCTGCCCGCCTCGGCCGCCGGTTACGAGGCTCTGCTGGCCCCGCCGCTCCGCCCCCCG
CGCGCCTACCTCAGCCTGCACGAGGCCGCCCCGCACCTCCACCTGCCCAGGGACCCGCTGGCCCTCGAGC
GCTTCTCGGCCACCGCGGCCGCGGCCCCGGATTTCCAGCCGCTGCTGGACAACGGCGAGCCGTGCATCGA
GGTGGAGTGCGGCGCCAACCGCGCGCTGCTCTACGTGCGCAAACTCTGCCAGGGCAGCAAGGGCCCGTCC
ATCCGCCACCGCGGCGAGTGGCTCACGCCCAACGAGTTCCAGTTCGTCAGCGGCCGCGAGACGGCCAAGG
ACTGGAAGCGCAGCATCCGCCACAAAGGGAAAAGTCTGAAGACGCTTATGTCCAAGGGGATCCTGCAGGT
GCATCCTCCGATCTGCGACTGCCCGGGCTGCCGAATATCCTCCCCGGTGAACCGGGGGCGGCTGGCAGAC
AAGAGGACAGTCGCCCTGCCTGCCGCCCGGAACCTGAAGAAGGAGCGAACTCCCAGCTTCTCTGCCAGCG
ATGGTGACAGCGACGGGAGTGGCCCCACCTGTGGGCGGCGGCCAGGCTTGAAGCAGGAGGATGGTCCGCA
CATCCGTATCATGAAGAGAAGAGTCCACACCCACTGGGACGTGAACATCTCTTTCCGAGAGGCGTCCTGC
AGCCAGGACGGCAACCTTCCCACCCTCATATCCAGCGTCCACCGCAGCCGCCACCTCGTTATGCCCGAGC
ATCAGAGCCGCTGTGAATTCCAGAGAGGCAGCCTGGAGATTGGCCTGCGACCCGCCGGTGACCTGTTGGG
CAAGAGGCTGGGCCGCTCCCCCCGTATCAGCAGCGACTGCTTTTCAGAGAAGAGGGCACGAAGCGAATCG
CCTCAAGCAGAGGCGCTGCTGCTGCCGCGGGAGCTGGGGCCCAGCATGGCCCCGGAGGACCATTACCGCC
GGCTTGTGTCAGCACTGAGCGAGGCCAGCACCTTTGAGGACCCTCAGCGCCTCTACCACCTGGGCCTCCC
CAGCCACGATCTCCTGAGGGTCCGGCAGGAGGTGGCGGCTGCAGCTCTGAGGGGCCCCAGTGGCCTGGAA
GCCCACCTGCCCTCCTCCACGGCAGGTCAGCGTCGGAAGCAGGGCCTGGCTCAGCACCGGGAGGGCGCCG
CCCCAGCTGCCGCCCCGTCCTTCTCGGAGAGGGAGCTGCCTCAGCCGCCCCCCTTGCTGTCGCCGCAGAA
TGCCCCTCACGTCGCCCTGGGCCCCCATCTCAGGCCCCCCTTCCTGGGGGTGCCCTCGGCTCTGTGCCAG
ACCCCAGGCTACGGCTTCCTGCCCCCCGCGCAGGCGGAGATGTTCGCCTGGCAGCAGGAGCTCCTGCGGA
AGCAGAACCTGGCCCGGCTGGAGCTGCCCGCCGACCTCCTGCGGCAGAAGGAGCTGGAGAGCGCGCGCCC
ACAGCTGCTGGCGCCCGAGACCGCCCTGCGCCCCAACGACGGCGCCGAGGAGCTGCAGCGGCGCGGGGCC
CTGCTGGTGCTGAACCACGGCGCGGCGCCACTGCTGGCCCTGCCCCCCCAGGGGCCCCCGGGCTCCGGAC
CCCCCACCCCGTCCCGGGACTCTGCCCGGCGAGCCCCCCGGAAGGGGGGTCCCGGCCCTGCCTCAGCGCG
GCCCAGCGAGTCCAAGGAGATGACGGGGGCTAGGCTCTGGGCACAAGATGGCTCGGAAGACGAGCCCCCC
AAAGACTCGGACGGAGAGGACCCCGAGACGGCAGCTGTTGGGTGCAGGGGGCCCACTCCGGGCCAAGCTC
CAGCTGGAGGGGCCGGCGCCGAGGGGAAGGGGCTTTTCCCAGGGTCCACACTGCCCCTGGGCTTCCCTTA
TGCCGTCAGCCCCTACTTCCACACAGGCGCGGTAGGGGGACTCTCCATGGATGGGGAGGAGGCCCCAGCC
CCTGAGGACGTCACCAAGTGGACCGTGGATGACGTCTGCAGCTTCGTGGGGGGCCTGTCTGGCTGTGGAG
AGTACACTCGGGTCTTCAGGGAGCAGGGGATCGACGGGGAGACCCTGCCACTGCTGACGGAGGAGCACCT
GCTGACCAACATGGGGCTGAAGCTGGGGCCCGCCCTCAAGATCCGGGCCCAGGTGGCCAGGCGCCTGGGC
CGAGTTTTCTACGTGGCCAGCTTCCCCGTGGCTCTGCCACTGCAGCCACCAACCCTGCGGGCCCCGGAGC
GAGAACTCGGCACAGGAGAGCAGCCCTTGTCCCCCACGACGGCCACGTCCCCCTATGGAGGGGGCCACGC
CCTTGCCGGTCAAACTTCACCCAAGCAGGAGAATGGGACCTTGGCTCTACTTCCAGGGGCCCCCGACCCT
TCCCAGCCTCTGTGTTGA

Translation (845 aa):
MPAVKKEFPGREDLALALATFHPTLAALPLPPLPGYLAPLPAAAALPPAASLPASAAGYEALLAPPLRPP
RAYLSLHEAAPHLHLPRDPLALERFSATAAAAPDFQPLLDNGEPCIEVECGANRALLYVRKLCQGSKGPS
IRHRGEWLTPNEFQFVSGRETAKDWKRSIRHKGKSLKTLMSKGILQVHPPICDCPGCRISSPVNRGRLAD
KRTVALPAARNLKKERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASC
SQDGNLPTLISSVHRSRHLVMPEHQSRCEFQRGSLEIGLRPAGDLLGKRLGRSPRISSDCFSEKRARSES
PQAEALLLPRELGPSMAPEDHYRRLVSALSEASTFEDPQRLYHLGLPSHDLLRVRQEVAAAALRGPSGLE
AHLPSSTAGQRRKQGLAQHREGAAPAAAPSFSERELPQPPPLLSPQNAPHVALGPHLRPPFLGVPSALCQ
TPGYGFLPPAQAEMFAWQQELLRKQNLARLELPADLLRQKELESARPQLLAPETALRPNDGAEELQRRGA
LLVLNHGAAPLLALPPQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPP
KDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVGGLSMDGEEAPA
PEDVTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLGPALKIRAQVARRLG
RVFYVASFPVALPLQPPTLRAPERELGTGEQPLSPTTATSPYGGGHALAGQTSPKQENGTLALLPGAPDP
SQPLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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