NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1456.1 Public Homo sapiens 1 ELK4 24 110 108 CCDS HistoryNCBI Gene:2005Re-query CCDS DB by CCDS ID:1456.1Re-query CCDS DB by GeneID:2005See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1456.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357992.9 ENSP00000350681.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357992.9Link to Ensembl Protein Viewer:ENSP00000350681.4Re-query CCDS DB by Nucleotide ID:ENST00000357992Re-query CCDS DB by Protein ID:ENSP00000350681
Original member Current member EBI ENST00000616704.4 ENSP00000483628.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616704.4Link to Ensembl Protein Viewer:ENSP00000483628.1Re-query CCDS DB by Nucleotide ID:ENST00000616704Re-query CCDS DB by Protein ID:ENSP00000483628
Original member Current member NCBI NM_001973.4 NP_001964.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001973.4Link to Protein Sequence:NP_001964.2Re-query CCDS DB by Nucleotide ID:NM_001973Re-query CCDS DB by Protein ID:NP_001964Link to BLAST:NP_001964.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001964.2 431 P28324-1 431 100% 0 0

Chromosomal Locations for CCDS 1456.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205616546 205616644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205618957 205619073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205619966 205620838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205623676 205623882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGACAGTGCTATCACCCTGTGGCAGTTCCTTCTTCAGCTCCTGCAGAAGCCTCAGAACAAGCACATGA
TCTGTTGGACCTCTAATGATGGGCAGTTTAAGCTTTTGCAGGCAGAAGAGGTGGCTCGTCTCTGGGGGAT
TCGCAAGAACAAGCCTAACATGAATTATGACAAACTCAGCCGAGCCCTCAGATACTATTATGTAAAGAAT
ATCATCAAAAAAGTGAATGGTCAGAAGTTTGTGTACAAGTTTGTCTCTTATCCAGAGATTTTGAACATGG
ATCCAATGACAGTGGGCAGGATTGAGGGTGACTGTGAAAGTTTAAACTTCAGTGAAGTCAGCAGCAGTTC
CAAAGATGTGGAGAATGGAGGGAAAGATAAACCACCTCAGCCTGGTGCCAAGACCTCTAGCCGCAATGAC
TACATACACTCTGGCTTATATTCTTCATTTACTCTCAACTCTTTGAACTCCTCCAATGTAAAGCTTTTCA
AATTGATAAAGACTGAGAATCCAGCCGAGAAACTGGCAGAGAAAAAATCTCCTCAGGAGCCCACACCATC
TGTCATCAAATTTGTCACGACACCTTCCAAAAAGCCACCGGTTGAACCTGTTGCTGCCACCATTTCAATT
GGCCCAAGTATTTCTCCATCTTCAGAAGAAACTATCCAAGCTTTGGAGACATTGGTTTCCCCAAAACTGC
CTTCCCTGGAAGCCCCAACCTCTGCCTCTAACGTAATGACTGCTTTTGCCACCACACCACCCATTTCGTC
CATACCCCCTTTGCAGGAACCTCCCAGAACACCTTCACCACCACTGAGTTCTCACCCAGACATCGACACA
GACATTGATTCAGTGGCTTCTCAGCCAATGGAACTTCCAGAGAATTTGTCACTGGAGCCTAAAGACCAGG
ATTCAGTCTTGCTAGAAAAGGACAAAGTAAATAATTCATCAAGATCCAAGAAACCCAAAGGGTTAGAACT
GGCACCCACCCTTGTGATCACGAGCAGTGATCCAAGCCCACTGGGAATACTGAGCCCATCTCTCCCTACA
GCTTCTCTTACACCAGCATTTTTTTCACAGACACCCATCATACTGACTCCAAGCCCCTTGCTCTCCAGTA
TCCACTTCTGGAGTACTCTCAGTCCTGTTGCTCCCCTAAGTCCAGCCAGACTGCAAGGTGCTAACACACT
TTTCCAGTTTCCTTCTGTACTGAACAGTCATGGGCCATTCACTCTGTCTGGGCTGGATGGACCTTCCACC
CCTGGCCCATTTTCCCCAGACCTACAGAAGACATAA

Translation (431 aa):
MDSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKN
IIKKVNGQKFVYKFVSYPEILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRND
YIHSGLYSSFTLNSLNSSNVKLFKLIKTENPAEKLAEKKSPQEPTPSVIKFVTTPSKKPPVEPVAATISI
GPSISPSSEETIQALETLVSPKLPSLEAPTSASNVMTAFATTPPISSIPPLQEPPRTPSPPLSSHPDIDT
DIDSVASQPMELPENLSLEPKDQDSVLLEKDKVNNSSRSKKPKGLELAPTLVITSSDPSPLGILSPSLPT
ASLTPAFFSQTPIILTPSPLLSSIHFWSTLSPVAPLSPARLQGANTLFQFPSVLNSHGPFTLSGLDGPST
PGPFSPDLQKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH