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Report for CCDS47702.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
47702.1 |
Public |
Homo sapiens |
7 |
GARIN1A |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:346653](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:47702.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:346653](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 47702.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000641987.1 |
ENSP00000493021.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000641987.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000493021.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000641987](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000493021](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000641888.1 |
ENSP00000493352.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000641888.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000493352.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000641888](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000493352](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000682356.1 |
ENSP00000506740.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000682356.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000506740.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000682356](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000506740](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001128926.4 |
NP_001122398.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001128926.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001122398.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001128926](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001122398](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001122398.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001122398.1 |
300 |
Q6NXP2-2 |
300 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 47702.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (903 nt): ATGAGTAAAATCAGGGGCCTCCCACCTGAGGTCAGGGAACCAGGCCCTGGAGTGGAACTTGGGGTGGAAA ATGGCCTTCTTTGTCAACTGATTCATTCTCCAGAATTCAATTTGTTCTCCAACTCGGTGGTGTTTGAAAG CAACTTTATCCAGGTCACTAAGCCCGGGAACTGGAGAGATGTCTGTGAAGGGTCTGCCACCGTGATCCTC GGGGTCACCTCCTCGGTGCCCTCCCTGCCACTCCCCAATGTCCTCCTGATGGCCAATGTTACCTGGCCCC AGGGTCCATTTACCACCTGGAGCACACCTGGTGACGCCCCAGTCATCAACCTCAGCAGGCTTCTCCCCCT GAAGTACGTGGAGCTACGAATCTACGACCGGCTCCAGCGCATCCTGAGGGTTAGGACAGTGACCGAAAAG ATCTACTATCTGAAGCTCCACGAAAAACACCCAGAGATTGTGTTTCAATTCTGGGTCCGCTTGGTGAAAA TTCTGCAGAAAGGCCTGTCCATCACCACCAAAGACCCGAGAATCAAATTCACTCACTGCCTGGTGCCCAA GATGCCCACCAACTCCACAGAAACAACACCTGAAAACAGCCTCCTGTCATCCCCCCAGCCCAGCGAGCCC CTCGTGCTGCTGGCGGCTGAGCAGACCAGTGGCAGTTTCTCACAGCTCTCAGGAAAGCCCCAGCTCACAG CAGACAGGAACAATGACACTGCCATTGAAATAGACAACTGCAGCAGCTACAAGATACCCTCTCCAGTGGC ATCTCCAATCAATTTGAATATACCCATGAGAGCTGCCTTGAGCCACAGCCTCTGGGAACAAGAGGACTGG AATGAGCACCTTCTACAAGTTCATATAGCCAGTTACCTAGGAGAGCACTTCTTGGGAGCCTGA
Translation (300 aa): MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVCEGSATVIL GVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQRILRVRTVTEK IYYLKLHEKHPEIVFQFWVRLVKILQKGLSITTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEP LVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDW NEHLLQVHIASYLGEHFLGA
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