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Report for CCDS3811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3811.1 Public Homo sapiens 4 TLL1 24 110 108 CCDS HistoryNCBI Gene:7092Re-query CCDS DB by CCDS ID:3811.1Re-query CCDS DB by GeneID:7092See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3811.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000061240.7 ENSP00000061240.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000061240.7Link to Ensembl Protein Viewer:ENSP00000061240.2Re-query CCDS DB by Nucleotide ID:ENST00000061240Re-query CCDS DB by Protein ID:ENSP00000061240
Original member Current member NCBI NM_012464.5 NP_036596.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012464.5Link to Protein Sequence:NP_036596.3Re-query CCDS DB by Nucleotide ID:NM_012464Re-query CCDS DB by Protein ID:NP_036596Link to BLAST:NP_036596.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036596.3 1013 O43897-1 1013 100% 0 0

Chromosomal Locations for CCDS 3811.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 165873905 165874073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 165989381 165989491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 165992804 165992884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 165994381 165994533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 165995061 165995178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166003391 166003569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166007943 166008048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166014436 166014560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166025316 166025431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166039339 166039441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166042027 166042143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166043274 166043419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166055076 166055271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166057184 166057309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166060028 166060188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166065683 166065863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166074878 166075003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166077903 166078030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166091128 166091341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166099277 166099527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166100742 166100876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3042 nt):
ATGGGGTTGGGAACGCTTTCCCCGAGGATGCTCGTGTGGCTGGTGGCCTCGGGGATTGTTTTCTACGGGG
AGCTATGGGTCTGCGCTGGCCTCGATTATGATTACACTTTTGATGGGAACGAAGAGGATAAAACAGAGAC
TATAGATTACAAGGACCCGTGTAAAGCCGCTGTATTTTGGGGCGATATTGCCTTAGATGATGAAGACTTA
AATATCTTTCAAATAGATAGGACAATTGACCTTACGCAGAACCCCTTTGGAAACCTTGGACATACCACAG
GTGGACTTGGAGACCATGCTATGTCAAAGAAGCGAGGGGCCCTCTACCAACTTATAGACAGGATAAGAAG
AATTGGCTTTGGCTTGGAGCAAAACAACACAGTTAAGGGAAAAGTACCTCTACAATTCTCAGGGCAAAAT
GAGAAAAATCGAGTTCCCAGAGCCGCTACATCAAGAACGGAAAGAATATGGCCTGGAGGCGTTATTCCTT
ATGTTATAGGAGGAAACTTCACTGGCAGCCAGAGAGCCATGTTCAAGCAGGCCATGAGGCACTGGGAAAA
GCACACATGTGTGACTTTCATAGAAAGAAGTGATGAAGAGAGTTACATTGTATTCACCTATAGGCCTTGT
GGATGCTGCTCCTATGTAGGTCGGCGAGGAAATGGACCTCAGGCAATCTCTATCGGCAAGAACTGTGATA
AATTTGGGATTGTTGTTCATGAATTGGGTCATGTGATAGGCTTTTGGCATGAACACACAAGACCAGATCG
AGATAACCACGTAACTATCATAAGAGAAAACATCCAGCCAGGTCAAGAGTACAATTTTCTGAAGATGGAG
CCTGGAGAAGTAAACTCACTTGGAGAAAGATATGATTTCGACAGTATCATGCACTATGCCAGGAACACCT
TCTCAAGGGGGATGTTTCTGGATACCATTCTCCCCTCCCGTGATGATAATGGCATACGTCCTGCAATTGG
TCAGCGAACCCGTCTAAGCAAAGGAGATATCGCACAGGCAAGAAAGCTGTATAGATGTCCAGCATGTGGA
GAAACTCTACAAGAATCCAATGGCAACCTTTCCTCTCCAGGATTTCCCAATGGCTACCCTTCTTACACAC
ACTGCATCTGGAGAGTTTCTGTGACCCCAGGGGAGAAGATTGTTTTAAATTTTACAACGATGGATCTATA
CAAGAGTAGTTTGTGCTGGTATGACTATATTGAAGTAAGAGACGGGTACTGGAGAAAATCACCTCTCCTT
GGTAGATTCTGTGGGGACAAATTGCCTGAAGTTCTTACTTCTACAGACAGCAGAATGTGGATTGAGTTTC
GTAGCAGCAGTAATTGGGTAGGAAAAGGCTTTGCAGCTGTCTATGAAGCGATCTGTGGAGGTGAGATACG
TAAAAATGAAGGACAGATTCAGTCTCCCAATTATCCTGATGACTATCGCCCGATGAAAGAATGTGTGTGG
AAAATAACAGTGTCTGAGAGCTACCACGTCGGGCTGACCTTTCAGTCCTTTGAGATTGAAAGACATGACA
ATTGTGCTTATGACTACCTGGAAGTTAGAGATGGAACCAGTGAAAATAGCCCTTTGATAGGGCGTTTCTG
TGGTTATGACAAACCTGAAGACATAAGATCTACCTCCAATACTTTGTGGATGAAGTTTGTTTCTGACGGA
ACTGTGAACAAAGCAGGGTTTGCTGCTAACTTTTTTAAAGAGGAAGATGAGTGTGCCAAACCTGACCGTG
GAGGCTGTGAGCAGCGATGTCTGAACACTCTGGGCAGTTACCAGTGTGCCTGTGAGCCTGGCTATGAGCT
GGGCCCAGACAGAAGGAGCTGTGAAGCTGCTTGTGGTGGACTTCTTACCAAACTTAACGGCACCATAACC
ACCCCTGGCTGGCCCAAGGAGTACCCTCCTAATAAGAACTGTGTGTGGCAAGTGGTTGCACCAACCCAGT
ACAGAATTTCTGTGAAGTTTGAGTTTTTTGAATTGGAAGGCAATGAAGTTTGCAAATATGATTATGTGGA
GATCTGGAGTGGTCTTTCCTCTGAGTCTAAACTGCATGGCAAATTCTGTGGCGCTGAAGTGCCTGAAGTG
ATCACATCCCAGTTCAACAATATGAGAATTGAATTCAAATCTGACAATACTGTATCCAAGAAGGGCTTCA
AAGCACATTTTTTCTCAGACAAAGATGAATGCTCTAAGGATAATGGTGGATGTCAGCACGAATGTGTCAA
CACGATGGGGAGCTACATGTGTCAATGCCGTAATGGATTTGTGCTACATGACAATAAACATGATTGCAAG
GAAGCTGAGTGTGAACAGAAGATCCACAGTCCAAGTGGCCTCATCACCAGTCCCAACTGGCCAGACAAGT
ACCCAAGCAGGAAAGAATGCACTTGGGAAATCAGCGCCACTCCTGGCCACCGAATCAAATTAGCCTTTAG
TGAATTTGAGATTGAGCAGCATCAAGAATGTGCTTATGACCACTTAGAAGTATTTGATGGAGAAACAGAA
AAGTCACCGATTCTTGGACGACTGTGTGGCAACAAGATACCAGATCCCCTTGTGGCTACTGGAAATAAAA
TGTTTGTTCGGTTTGTTTCTGATGCATCTGTTCAAAGAAAAGGCTTTCAAGCTACACATTCTACAGAGTG
TGGCGGACGATTGAAAGCAGAATCAAAACCAAGAGATCTGTACTCACATGCTCAGTTTGGTGATAACAAC
TACCCAGGACAGGTTGACTGTGAATGGCTATTAGTATCAGAACGGGGCTCTCGACTTGAATTATCCTTCC
AGACATTTGAAGTGGAGGAAGAAGCAGACTGTGGCTATGACTATGTGGAGCTCTTTGATGGTCTTGATTC
AACAGCTGTGGGGCTTGGTCGATTCTGTGGATCCGGGCCACCAGAAGAGATTTATTCAATTGGAGATTCA
GTTTTAATTCATTTCCACACTGATGACACAATCAACAAGAAGGGATTTCATATAAGATACAAAAGCATAA
GATATCCAGATACCACACATACCAAAAAATAA

Translation (1013 aa):
MGLGTLSPRMLVWLVASGIVFYGELWVCAGLDYDYTFDGNEEDKTETIDYKDPCKAAVFWGDIALDDEDL
NIFQIDRTIDLTQNPFGNLGHTTGGLGDHAMSKKRGALYQLIDRIRRIGFGLEQNNTVKGKVPLQFSGQN
EKNRVPRAATSRTERIWPGGVIPYVIGGNFTGSQRAMFKQAMRHWEKHTCVTFIERSDEESYIVFTYRPC
GCCSYVGRRGNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDNHVTIIRENIQPGQEYNFLKME
PGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPAIGQRTRLSKGDIAQARKLYRCPACG
ETLQESNGNLSSPGFPNGYPSYTHCIWRVSVTPGEKIVLNFTTMDLYKSSLCWYDYIEVRDGYWRKSPLL
GRFCGDKLPEVLTSTDSRMWIEFRSSSNWVGKGFAAVYEAICGGEIRKNEGQIQSPNYPDDYRPMKECVW
KITVSESYHVGLTFQSFEIERHDNCAYDYLEVRDGTSENSPLIGRFCGYDKPEDIRSTSNTLWMKFVSDG
TVNKAGFAANFFKEEDECAKPDRGGCEQRCLNTLGSYQCACEPGYELGPDRRSCEAACGGLLTKLNGTIT
TPGWPKEYPPNKNCVWQVVAPTQYRISVKFEFFELEGNEVCKYDYVEIWSGLSSESKLHGKFCGAEVPEV
ITSQFNNMRIEFKSDNTVSKKGFKAHFFSDKDECSKDNGGCQHECVNTMGSYMCQCRNGFVLHDNKHDCK
EAECEQKIHSPSGLITSPNWPDKYPSRKECTWEISATPGHRIKLAFSEFEIEQHQECAYDHLEVFDGETE
KSPILGRLCGNKIPDPLVATGNKMFVRFVSDASVQRKGFQATHSTECGGRLKAESKPRDLYSHAQFGDNN
YPGQVDCEWLLVSERGSRLELSFQTFEVEEEADCGYDYVELFDGLDSTAVGLGRFCGSGPPEEIYSIGDS
VLIHFHTDDTINKKGFHIRYKSIRYPDTTHTKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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