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Report for CCDS9299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9299.1 Public Homo sapiens 13 SGCG 24 110 108 CCDS HistoryNCBI Gene:6445Re-query CCDS DB by CCDS ID:9299.1Re-query CCDS DB by GeneID:6445See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9299.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000218867.4 ENSP00000218867.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000218867.4Link to Ensembl Protein Viewer:ENSP00000218867.3Re-query CCDS DB by Nucleotide ID:ENST00000218867Re-query CCDS DB by Protein ID:ENSP00000218867
Original member Current member NCBI NM_000231.3 NP_000222.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000231.3Link to Protein Sequence:NP_000222.2Re-query CCDS DB by Nucleotide ID:NM_000231Re-query CCDS DB by Protein ID:NP_000222Link to BLAST:NP_000222.2
Original member Current member NCBI NM_001378245.1 NP_001365174.1 Accepted alive Link to Nucleotide Sequence:NM_001378245.1Link to Protein Sequence:NP_001365174.1Re-query CCDS DB by Nucleotide ID:NM_001378245Re-query CCDS DB by Protein ID:NP_001365174Link to BLAST:NP_001365174.1
Original member Current member NCBI NM_001378246.1 NP_001365175.1 Accepted alive Link to Nucleotide Sequence:NM_001378246.1Link to Protein Sequence:NP_001365175.1Re-query CCDS DB by Nucleotide ID:NM_001378246Re-query CCDS DB by Protein ID:NP_001365175Link to BLAST:NP_001365175.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000222.2 291 Q13326 291 100% 0 0
NP_001365174.1 291 Q13326 291 100% 0 0
NP_001365175.1 291 Q13326 291 100% 0 0

Chromosomal Locations for CCDS 9299.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23203695 23203889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23234611 23234712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23250630 23250717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23279359 23279478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23295415 23295487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23320637 23320760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23324368 23324541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGTGCGTGAGCAGTACACTACAGCCACAGAAGGCATCTGCATAGAGAGGCCAGAGAATCAGTATGTCT
ACAAAATTGGCATTTATGGCTGGAGAAAGCGCTGTCTCTACTTGTTTGTTCTTCTTTTACTCATCATCCT
CGTTGTGAATTTAGCTCTTACAATTTGGATTCTTAAAGTGATGTGGTTTTCTCCAGCAGGAATGGGCCAC
TTGTGTGTAACAAAAGATGGACTGCGCTTGGAAGGGGAATCAGAATTTTTATTCCCATTGTATGCCAAAG
AAATACACTCCAGAGTGGACTCATCTCTGCTTCTACAATCAACCCAGAATGTGACTGTAAATGCGCGCAA
CTCAGAAGGGGAGGTCACAGGCAGGTTAAAAGTCGGTCCCAAAATGGTAGAAGTCCAGAATCAACAGTTT
CAGATCAACTCCAACGACGGCAAGCCACTATTTACTGTAGATGAGAAGGAAGTTGTGGTTGGTACAGATA
AACTTCGAGTAACTGGGCCTGAAGGGGCTCTTTTTGAACATTCAGTGGAGACACCCCTTGTCAGAGCCGA
CCCGTTTCAAGACCTTAGATTAGAATCCCCCACTCGGAGTCTAAGCATGGATGCCCCAAGGGGTGTGCAT
ATTCAAGCTCACGCTGGGAAAATTGAGGCGCTTTCTCAAATGGATATTCTTTTTCATAGTAGTGATGGAA
TGCTTGTGCTTGATGCTGAAACTGTGTGCTTACCCAAGCTGGTGCAGGGGACGTGGGGTCCCTCTGGCAG
CTCACAGAGCCTCTACGAAATCTGTGTGTGTCCAGATGGGAAGCTGTACCTGTCTGTGGCCGGTGTGAGC
ACCACGTGCCAGGAGCACAACCACATCTGCCTCTGA

Translation (291 aa):
MVREQYTTATEGICIERPENQYVYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKVMWFSPAGMGH
LCVTKDGLRLEGESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEGEVTGRLKVGPKMVEVQNQQF
QINSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSVETPLVRADPFQDLRLESPTRSLSMDAPRGVH
IQAHAGKIEALSQMDILFHSSDGMLVLDAETVCLPKLVQGTWGPSGSSQSLYEICVCPDGKLYLSVAGVS
TTCQEHNHICL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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