NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS690.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
690.2 Public Homo sapiens 1 TTLL7 24 110 108 CCDS HistoryNCBI Gene:79739Re-query CCDS DB by CCDS ID:690.2Re-query CCDS DB by GeneID:79739See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 690.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260505.13 ENSP00000260505.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260505.13Link to Ensembl Protein Viewer:ENSP00000260505.8Re-query CCDS DB by Nucleotide ID:ENST00000260505Re-query CCDS DB by Protein ID:ENSP00000260505
Original member Current member NCBI NM_001350214.2 NP_001337143.1 Accepted alive Link to Nucleotide Sequence:NM_001350214.2Link to Protein Sequence:NP_001337143.1Re-query CCDS DB by Nucleotide ID:NM_001350214Re-query CCDS DB by Protein ID:NP_001337143Link to BLAST:NP_001337143.1
Original member Current member NCBI NM_024686.6 NP_078962.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024686.6Link to Protein Sequence:NP_078962.4Re-query CCDS DB by Nucleotide ID:NM_024686Re-query CCDS DB by Protein ID:NP_078962Link to BLAST:NP_078962.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337143.1 887 Q6ZT98-1 887 100% 0 0
NP_078962.4 887 Q6ZT98-1 887 100% 0 0

Chromosomal Locations for CCDS 690.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 83869962 83870082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83882963 83883136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83890321 83890481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83904079 83904159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83906329 83906463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83907456 83907661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83911165 83911363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83917604 83917690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83919699 83919834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83921087 83921160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83921247 83921394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83929136 83929230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83933608 83933766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83937852 83938016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83942463 83942679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83947124 83947282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83948628 83948695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83949865 83949986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83951845 83951976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83952187 83952211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2664 nt):
ATGCCATCTCTGCCTCAAGAAGGAGTTATTCAGGGACCCTCTCCCCTGGATTTGAATACAGAATTACCTT
ATCAAAGCACAATGAAAAGGAAAGTCAGAAAGAAGAAAAAGAAGGGAACCATTACAGCAAATGTTGCCGG
GACAAAGTTTGAAATTGTTCGTTTAGTAATAGATGAAATGGGATTTATGAAAACTCCAGATGAGGATGAA
ACAAGTAATCTTATATGGTGTGATTCTGCTGTTCAGCAGGAGAAAATTTCAGAGCTGCAAAATTATCAGA
GGATCAACCATTTTCCAGGAATGGGGGAGATCTGTAGGAAGGATTTCTTAGCAAGAAATATGACCAAAAT
GATCAAGTCTCGGCCTCTGGATTATACCTTTGTTCCTCGAACTTGGATCTTTCCTGCTGAATATACTCAA
TTCCAAAATTATGTGAAAGAATTGAAGAAAAAACGGAAGCAGAAAACTTTTATAGTGAAACCAGCTAATG
GTGCAATGGGTCATGGGATTTCTTTGATAAGAAATGGTGACAAACTTCCATCTCAGGATCATTTGATTGT
TCAAGAATACATTGAAAAGCCTTTCCTAATGGAAGGTTACAAGTTTGACTTACGAATTTATATTCTGGTT
ACATCGTGTGATCCACTAAAAATATTTCTCTACCATGATGGGCTTGTGCGAATGGGTACAGAGAAGTACA
TTCCACCTAATGAGTCCAATTTGACCCAGTTATACATGCATCTGACAAACTACTCCGTGAACAAGCATAA
TGAGCATTTTGAACGGGATGAAACTGAGAACAAAGGCAGCAAACGTTCCATCAAATGGTTTACAGAATTC
CTTCAAGCAAATCAACATGATGTTGCTAAGTTTTGGAGTGATATTTCAGAATTGGTGGTAAAGACCCTGA
TTGTAGCAGAACCTCATGTCCTGCATGCCTATCGAATGTGTAGACCTGGTCAACCTCCAGGAAGCGAAAG
TGTCTGCTTTGAAGTCCTGGGATTTGATATTTTGTTGGATAGAAAACTAAAGCCATGGCTTCTGGAGATT
AACCGAGCCCCAAGCTTTGGAACTGATCAGAAAATAGACTATGATGTAAAAAGGGGAGTGCTGCTAAATG
CGTTGAAGCTACTAAACATAAGGACCAGTGACAAAAGAAGAAACTTGGCCAAACAAAAAGCTGAGGCTCA
AAGGAGGCTCTATGGTCAAAATTCAATTAAAAGGCTCTTACCAGGCTCCTCAGACTGGGAACAGCAGAGA
CACCAGTTGGAGAGGCGGAAAGAAGAGTTGAAAGAGAGACTCGCTCAAGTACGAAAGCAGATCTCACGAG
AAGAACATGAAAATCGACATATGGGGAATTATAGACGAATTTATCCTCCTGAAGATAAAGCATTACTTGA
AAAGTATGAAAATTTGTTAGCTGTTGCCTTTCAGACCTTCCTTTCAGGAAGAGCAGCTTCATTCCAGCGA
GAGTTGAATAATCCTTTGAAAAGGATGAAGGAAGAAGATATTTTGGATCTTCTGGAGCAATGTGAAATTG
ATGATGAAAAGTTGATGGGAAAAACTACCAAGACTCGAGGACCAAAGCCTCTGTGTTCTATGCCTGAGAG
TACTGAGATAATGAAAAGACCAAAGTACTGCAGCAGTGACAGCAGTTATGATAGTAGCAGCAGCTCTTCA
GAATCTGACGAAAATGAAAAAGAAGAGTACCAAAATAAGAAAAGAGAAAAGCAAGTTACATATAATCTTA
AACCCTCCAACCACTACAAATTAATTCAACAACCCAGCTCCATAAGACGTTCAGTCAGCTGCCCTCGGTC
CATCTCTGCTCAATCACCTTCCAGTGGGGACACCCGCCCATTTTCTGCTCAACAAATGATATCTGTGTCA
CGGCCAACTTCTGCATCTCGGTCACATTCCTTAAACCGTGCTTCCTCCTACATGAGGCATCTGCCTCACA
GTAATGATGCCTGCTCTACCAACTCTCAAGTGAGTGAGTCTTTGCGGCAACTGAAAACAAAAGAACAAGA
AGATGATCTAACAAGTCAGACCTTATTTGTTCTCAAAGACATGAAGATCCGGTTTCCAGGAAAGTCAGAT
GCAGAATCAGAACTTCTGATAGAAGATATCATTGATAACTGGAAGTATCATAAAACCAAAGTGGCTTCAT
ATTGGCTCATAAAATTGGACTCTGTAAAACAACGAAAAGTTTTGGACATAGTGAAAACAAGTATTCGTAC
AGTTCTTCCACGCATCTGGAAGGTGCCTGATGTTGAAGAAGTAAATTTATATCGGATTTTCAACCGGGTT
TTTAATCGCTTACTCTGGAGTCGTGGCCAAGGGCTGTGGAACTGTTTCTGTGATTCAGGATCCTCTTGGG
AGAGTATATTCAATAAAAGCCCGGAGGTGGTGACTCCTTTGCAGCTCCAGTGTTGCCAGCGCCTAGTGGA
GCTTTGTAAACAGTGCCTGCTAGTGGTTTACAAATATGCAACTGACAAAAGAGGATCACTTTCAGGCATT
GGTCCTGACTGGGGTAATTCCAGGTATTTACTACCAGGGAGCACCCAATTCTTCTTGAGAACACCAACCT
ACAACTTGAAGTACAATTCACCTGGAATGACTCGCTCCAATGTTTTGTTTACATCCAGATATGGCCATCT
GTGA

Translation (887 aa):
MPSLPQEGVIQGPSPLDLNTELPYQSTMKRKVRKKKKKGTITANVAGTKFEIVRLVIDEMGFMKTPDEDE
TSNLIWCDSAVQQEKISELQNYQRINHFPGMGEICRKDFLARNMTKMIKSRPLDYTFVPRTWIFPAEYTQ
FQNYVKELKKKRKQKTFIVKPANGAMGHGISLIRNGDKLPSQDHLIVQEYIEKPFLMEGYKFDLRIYILV
TSCDPLKIFLYHDGLVRMGTEKYIPPNESNLTQLYMHLTNYSVNKHNEHFERDETENKGSKRSIKWFTEF
LQANQHDVAKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLGFDILLDRKLKPWLLEI
NRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKRRNLAKQKAEAQRRLYGQNSIKRLLPGSSDWEQQR
HQLERRKEELKERLAQVRKQISREEHENRHMGNYRRIYPPEDKALLEKYENLLAVAFQTFLSGRAASFQR
ELNNPLKRMKEEDILDLLEQCEIDDEKLMGKTTKTRGPKPLCSMPESTEIMKRPKYCSSDSSYDSSSSSS
ESDENEKEEYQNKKREKQVTYNLKPSNHYKLIQQPSSIRRSVSCPRSISAQSPSSGDTRPFSAQQMISVS
RPTSASRSHSLNRASSYMRHLPHSNDACSTNSQVSESLRQLKTKEQEDDLTSQTLFVLKDMKIRFPGKSD
AESELLIEDIIDNWKYHKTKVASYWLIKLDSVKQRKVLDIVKTSIRTVLPRIWKVPDVEEVNLYRIFNRV
FNRLLWSRGQGLWNCFCDSGSSWESIFNKSPEVVTPLQLQCCQRLVELCKQCLLVVYKYATDKRGSLSGI
GPDWGNSRYLLPGSTQFFLRTPTYNLKYNSPGMTRSNVLFTSRYGHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH