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Report for CCDS5920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5920.1 Public Homo sapiens 7 TMUB1 24 110 108 CCDS HistoryNCBI Gene:83590Re-query CCDS DB by CCDS ID:5920.1Re-query CCDS DB by GeneID:83590See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5920.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297533.9 ENSP00000297533.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297533.9Link to Ensembl Protein Viewer:ENSP00000297533.4Re-query CCDS DB by Nucleotide ID:ENST00000297533Re-query CCDS DB by Protein ID:ENSP00000297533
Original member Current member EBI ENST00000392818.7 ENSP00000376565.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392818.7Link to Ensembl Protein Viewer:ENSP00000376565.3Re-query CCDS DB by Nucleotide ID:ENST00000392818Re-query CCDS DB by Protein ID:ENSP00000376565
Original member Current member EBI ENST00000462940.1 ENSP00000417519.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000462940.1Link to Ensembl Protein Viewer:ENSP00000417519.1Re-query CCDS DB by Nucleotide ID:ENST00000462940Re-query CCDS DB by Protein ID:ENSP00000417519
Original member Current member EBI ENST00000482202.5 ENSP00000418709.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482202.5Link to Ensembl Protein Viewer:ENSP00000418709.1Re-query CCDS DB by Nucleotide ID:ENST00000482202Re-query CCDS DB by Protein ID:ENSP00000418709
Original member Current member EBI ENST00000476627.5 ENSP00000419214.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000476627.5Link to Ensembl Protein Viewer:ENSP00000419214.1Re-query CCDS DB by Nucleotide ID:ENST00000476627Re-query CCDS DB by Protein ID:ENSP00000419214
Original member Current member NCBI NM_001136044.2 NP_001129516.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136044.2Link to Protein Sequence:NP_001129516.1Re-query CCDS DB by Nucleotide ID:NM_001136044Re-query CCDS DB by Protein ID:NP_001129516Link to BLAST:NP_001129516.1
Original member Current member NCBI NM_031434.4 NP_113622.1 Accepted alive Link to Nucleotide Sequence:NM_031434.4Link to Protein Sequence:NP_113622.1Re-query CCDS DB by Nucleotide ID:NM_031434Re-query CCDS DB by Protein ID:NP_113622Link to BLAST:NP_113622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129516.1 246 Q9BVT8 246 100% 0 0
NP_113622.1 246 Q9BVT8 246 100% 0 0

Chromosomal Locations for CCDS 5920.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151081549 151081900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151082175 151082563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGACCCTGATTGAAGGGGTGGGTGATGAGGTGACCGTCCTTTTCTCGGTGCTTGCCTGCCTTCTGGTGC
TGGCCCTTGCCTGGGTCTCAACGCACACCGCTGAGGGCGGGGACCCACTGCCCCAGCCGTCAGGGACCCC
AACGCCATCCCAGCCCAGCGCAGCCATGGCAGCTACCGACAGCATGAGAGGGGAGGCCCCAGGGGCAGAG
ACCCCCAGCCTGAGACACAGAGGTCAAGCTGCACAGCCAGAGCCCAGCACGGGGTTCACAGCAACACCGC
CAGCCCCGGACTCCCCGCAGGAGCCCCTCGTGCTACGGCTGAAATTCCTCAATGATTCAGAGCAGGTGGC
CAGGGCCTGGCCCCACGACACCATTGGCTCCTTGAAAAGGACCCAGTTTCCCGGCCGGGAACAGCAGGTG
CGACTCATCTACCAAGGGCAGCTGCTAGGCGACGACACCCAGACCCTGGGCAGCCTTCACCTCCCTCCCA
ACTGCGTTCTCCACTGCCACGTGTCCACGAGAGTCGGTCCCCCAAATCCCCCCTGCCCGCCGGGGTCCGA
GCCCGGCCCCTCCGGGCTGGAAATCGGCAGCCTGCTGCTGCCCCTGCTGCTCCTGCTGTTGCTGCTGCTC
TGGTACTGCCAGATCCAGTACCGGCCCTTCTTTCCCCTGACCGCCACTCTGGGCCTGGCCGGCTTCACCC
TGCTCCTCAGTCTCCTGGCCTTTGCCATGTACCGCCCGTAG

Translation (246 aa):
MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGGDPLPQPSGTPTPSQPSAAMAATDSMRGEAPGAE
TPSLRHRGQAAQPEPSTGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAWPHDTIGSLKRTQFPGREQQV
RLIYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNPPCPPGSEPGPSGLEIGSLLLPLLLLLLLLL
WYCQIQYRPFFPLTATLGLAGFTLLLSLLAFAMYRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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