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Report for CCDS31407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31407.1 Public Homo sapiens 11 OR52W1 24 110 108 CCDS HistoryNCBI Gene:120787Re-query CCDS DB by CCDS ID:31407.1Re-query CCDS DB by GeneID:120787See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31407.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311352.3 ENSP00000309673.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311352.3Link to Ensembl Protein Viewer:ENSP00000309673.2Re-query CCDS DB by Nucleotide ID:ENST00000311352Re-query CCDS DB by Protein ID:ENSP00000309673
Original member Current member NCBI NM_001005178.1 NP_001005178.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005178.1Link to Protein Sequence:NP_001005178.1Re-query CCDS DB by Nucleotide ID:NM_001005178Re-query CCDS DB by Protein ID:NP_001005178Link to BLAST:NP_001005178.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005178.1 320 Q6IF63 320 100% 0 0

Chromosomal Locations for CCDS 31407.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6199224 6200186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGCAGAAACTCTACAACTCAATTCCACCTTCCTACACCCAAACTTCTTCATACTGACTGGCTTTCCAG
GG
CTAGGAAGTGCCCAGACTTGGCTGACACTGGTCTTTGGGCCCATTTATCTGCTGGCCCTGCTGGGCAA
T
GGAGCACTGCCGGCAGTGGTGTGGATAGACTCCACACTGCACCAGCCCATGTTTCTACTGTTGGCCATC
CTG
GCAGCCACAGACCTGGGCTTAGCCACATCTATAGCCCCAGGGTTGCTGGCTGTGCTGTGGCTTGGGC
CC
CGATCTGTGCCATATGCTGTGTGCCTGGTCCAGATGTTCTTTGTACATGCACTGACTGCCATGGAATC
A
GGTGTGCTTTTGGCCATGGCCTGTGATCGTGCTGCGGCAATAGGGCGTCCACTGCACTACCCTGTCCTG
GTC
ACCAAAGCCTGTGTGGGTTATGCAGCCTTGGCCCTGGCACTGAAAGCTGTGGCTATTGTTGTACCTT
TC
CCACTGCTGGTGGCAAAGTTTGAGCACTTCCAAGCCAAGACCATAGGCCATACCTATTGTGCACACAT
G
GCAGTGGTAGAACTGGTGGTGGGTAACACACAGGCCACCAACTTATATGGTCTGGCACTTTCACTGGCC
ATC
TCAGGTATGGATATTCTGGGTATCACTGGCTCCTATGGACTCATTGCCCATGCTGTGCTGCAGCTAC
CT
ACCCGGGAGGCCCATGCCAAGGCCTTTGGTACATGTAGTTCTCACATCTGTGTCATTCTGGCCTTCTA
C
ATACCTGGTCTCTTCTCCTACCTCACACACCGCTTTGGTCATCACACTGTCCCAAAGCCTGTGCACATC
CTT
CTCTCCAACATCTACTTGCTGCTGCCACCTGCCCTCAACCCCCTCATCTATGGGGCCCGCACCAAGC
AG
ATCAGAGACCGACTCCTGGAAACCTTCACATTCAGAAAAAGCCCGTTGTAA


Translation (320 aa):
MAETLQLNSTFLHPNFFILTGFPGLGSAQTWLTLVFGPIYLLALLGNGALPAVVWIDSTLHQPMFLLLAI
L
AATDLGLATSIAPGLLAVLWLGPRSVPYAVCLVQMFFVHALTAMESGVLLAMACDRAAAIGRPLHYPVL
V
TKACVGYAALALALKAVAIVVPFPLLVAKFEHFQAKTIGHTYCAHMAVVELVVGNTQATNLYGLALSLA
I
SGMDILGITGSYGLIAHAVLQLPTREAHAKAFGTCSSHICVILAFYIPGLFSYLTHRFGHHTVPKPVHI
L
LSNIYLLLPPALNPLIYGARTKQIRDRLLETFTFRKSPL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser