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Report for CCDS5956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5956.1 Public Homo sapiens 8 CLN8 24 110 108 CCDS HistoryNCBI Gene:2055Re-query CCDS DB by CCDS ID:5956.1Re-query CCDS DB by GeneID:2055See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5956.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331222.6 ENSP00000328182.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331222.6Link to Ensembl Protein Viewer:ENSP00000328182.4Re-query CCDS DB by Nucleotide ID:ENST00000331222Re-query CCDS DB by Protein ID:ENSP00000328182
Original member Current member EBI ENST00000635751.1 ENSP00000489694.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000635751.1Link to Ensembl Protein Viewer:ENSP00000489694.1Re-query CCDS DB by Nucleotide ID:ENST00000635751Re-query CCDS DB by Protein ID:ENSP00000489694
Original member Current member EBI ENST00000519254.2 ENSP00000490016.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519254.2Link to Ensembl Protein Viewer:ENSP00000490016.1Re-query CCDS DB by Nucleotide ID:ENST00000519254Re-query CCDS DB by Protein ID:ENSP00000490016
Original member Current member EBI ENST00000637083.1 ENSP00000490235.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000637083.1Link to Ensembl Protein Viewer:ENSP00000490235.1Re-query CCDS DB by Nucleotide ID:ENST00000637083Re-query CCDS DB by Protein ID:ENSP00000490235
Original member Current member EBI ENST00000635970.1 ENSP00000490439.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000635970.1Link to Ensembl Protein Viewer:ENSP00000490439.1Re-query CCDS DB by Nucleotide ID:ENST00000635970Re-query CCDS DB by Protein ID:ENSP00000490439
Original member Current member EBI ENST00000637156.1 ENSP00000490458.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000637156.1Link to Ensembl Protein Viewer:ENSP00000490458.1Re-query CCDS DB by Nucleotide ID:ENST00000637156Re-query CCDS DB by Protein ID:ENSP00000490458
Original member Current member NCBI NM_018941.4 NP_061764.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018941.4Link to Protein Sequence:NP_061764.2Re-query CCDS DB by Nucleotide ID:NM_018941Re-query CCDS DB by Protein ID:NP_061764Link to BLAST:NP_061764.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061764.2 286 Q9UBY8 286 100% 0 0

Chromosomal Locations for CCDS 5956.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 1771055 1771597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1780250 1780567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGAATCCTGCGAGCGATGGGGGCACATCAGAGAGCATTTTTGACCTGGACTATGCATCCTGGGGGATCC
GCTCCACGCTGATGGTCGCTGGCTTTGTCTTCTACTTGGGCGTCTTTGTGGTCTGCCACCAGCTGTCCTC
TTCCCTGAATGCCACTTACCGTTCTTTGGTGGCCAGAGAGAAGGTCTTCTGGGACCTGGCGGCCACGCGT
GCAGTCTTTGGTGTTCAGAGCACAGCCGCAGGCCTGTGGGCTCTGCTGGGGGACCCTGTGCTGCATGCCG
ACAAGGCGCGTGGCCAGCAGAACTGGTGCTGGTTTCACATCACGACAGCAACGGGATTCTTTTGCTTTGA
AAATGTTGCAGTCCACCTGTCCAACTTGATCTTCCGGACATTTGACTTGTTTCTGGTTATCCACCATCTC
TTTGCCTTTCTTGGGTTTCTTGGCTGCTTGGTCAATCTCCAAGCTGGCCACTATCTAGCTATGACCACGT
TGCTCCTGGAGATGAGCACGCCCTTTACCTGCGTTTCCTGGATGCTCTTAAAGGCGGGCTGGTCCGAGTC
TCTGTTTTGGAAGCTCAACCAGTGGCTGATGATTCACATGTTTCACTGCCGCATGGTTCTAACCTACCAC
ATGTGGTGGGTGTGTTTCTGGCACTGGGACGGCCTGGTCAGCAGCCTGTATCTGCCTCATTTGACACTGT
TCCTTGTCGGACTGGCTCTGCTTACGCTAATCATTAATCCATATTGGACCCATAAGAAGACTCAGCAGCT
TCTCAATCCGGTGGACTGGAACTTCGCACAGCCAGAAGCCAAGAGCAGGCCAGAAGGCAACGGGCAGCTG
CTGCGGAAGAAGAGGCCATAG

Translation (286 aa):
MNPASDGGTSESIFDLDYASWGIRSTLMVAGFVFYLGVFVVCHQLSSSLNATYRSLVAREKVFWDLAATR
AVFGVQSTAAGLWALLGDPVLHADKARGQQNWCWFHITTATGFFCFENVAVHLSNLIFRTFDLFLVIHHL
FAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLKAGWSESLFWKLNQWLMIHMFHCRMVLTYH
MWWVCFWHWDGLVSSLYLPHLTLFLVGLALLTLIINPYWTHKKTQQLLNPVDWNFAQPEAKSRPEGNGQL
LRKKRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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