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Report for CCDS45105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45105.1 Public Homo sapiens 14 TRIM9 24 110 108 CCDS HistoryNCBI Gene:114088Re-query CCDS DB by CCDS ID:45105.1Re-query CCDS DB by GeneID:114088See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45105.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360392.4 ENSP00000353561.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360392.4Link to Ensembl Protein Viewer:ENSP00000353561.4Re-query CCDS DB by Nucleotide ID:ENST00000360392Re-query CCDS DB by Protein ID:ENSP00000353561
Original member Current member NCBI NM_052978.5 NP_443210.1 Accepted alive Link to Nucleotide Sequence:NM_052978.5Link to Protein Sequence:NP_443210.1Re-query CCDS DB by Nucleotide ID:NM_052978Re-query CCDS DB by Protein ID:NP_443210Link to BLAST:NP_443210.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443210.1 550 Q9C026-5 550 100% 0 0

Chromosomal Locations for CCDS 45105.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50998000 50998188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51000683 51000840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51009080 51009233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51010384 51010494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51022835 51022957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51025265 51025360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51094118 51094939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGGAGGAGATGGAAGAGGAGTTGAAATGCCCCGTGTGCGGCTCCTTCTATCGGGAGCCCATCATCCTGC
CCTGCTCTCACAATTTGTGTCAGGCGTGCGCCCGCAACATCCTGGTGCAGACCCCAGAGTCTGAATCCCC
CCAGAGCCATCGGGCCGCGGGCTCCGGGGTCTCCGACTATGACTATCTGGACCTGGACAAGATGAGCCTA
TACAGCGAGGCGGACAGCGGCTATGGCTCCTACGGGGGGTTCGCCAGCGCCCCCACTACCCCGTGCCAGA
AGTCCCCCAACGGCGTCCGCGTGTTTCCCCCGGCTATGCCGCCACCGGCCACCCACTTGTCACCGGCCCT
GGCCCCGGTGCCCCGCAACTCCTGTATCACCTGCCCCCAGTGTCACCGCAGCCTCATCCTGGATGACCGG
GGGCTCCGCGGCTTCCCCAAGAATCGCGTACTGGAAGGGGTAATTGACCGCTACCAGCAGAGCAAAGCCG
CGGCCCTCAAGTGCCAGCTCTGCGAGAAGGCGCCCAAGGAAGCCACCGTCATGTGCGAACAGTGCGATGT
CTTCTACTGCGATCCGTGCCGCCTGCGCTGCCACCCGCCCCGGGGGCCCCTAGCCAAGCACCGCCTGGTG
CCCCCGGCCCAGGGTCGTGTGAGCCGGAGGCTGAGCCCACGCAAGGTCTCCACCTGCACAGACCACGAGC
TGGAGAACCACAGCATGTACTGCGTGCAATGCAAGATGCCCGTGTGCTACCAGTGCTTGGAGGAGGGCAA
ACACTCCAGCCACGAAGTCAAGGCTCTGGGGGCCATGTGGAAACTACATAAGAGCCAGCTCTCCCAGGCG
CTGAACGGACTGTCAGACAGGGCCAAAGAAGCCAAGGAGTTTCTGGTACAGCTGCGCAACATGGTCCAGC
AGATCCAGGAGAACAGTGTGGAGTTTGAAGCCTGTCTGGTGGCCCAATGTGATGCCCTCATCGATGCCCT
CAACAGAAGAAAAGCCCAGCTGCTGGCCCGCGTCAACAAGGAGCATGAGCACAAGCTGAAGGTGGTTCGA
GATCAGATCTCTCACTGCACAGTGAAATTGCGCCAGACCACAGGTCTCATGGAGTACTGCTTGGAGGTGA
TTAAGGAAAATGATCCTAGTGGTTTTTTGCAGATTTCTGACGCCCTCATAAGAAGAGTGCACCTGACTGA
GGATCAGTGGGGTAAAGGCACACTCACTCCAAGGATGACCACGGACTTTGACTTGAGTCTGGACAACAGC
CCTCTGCTGCAATCCATCCACCAGCTGGATTTCGTGCAAGTGAAAGCTTCCTCTCCAGTCCCAGCAACCC
CTATCCTACAGCTGGAGGAATGTTGTACCCACAACAACAGCGCTACGTTGTCCTGGAAACAGCCACCTCT
GTCCACGGTGCCCGCCGATGGATACATTCTGGAGCTGGATGATGGCAACGGTGGTCAATTCCGGGAGGTG
TATGTGGGGAAGGAGACAATGTGCACTGTGGATGGTCTTCACTTCAACAGCACATACAACGCTCGGGTCA
AGGCCTTCAACAAAACAGGAGTCAGCCCGTACAGCAAGACCCTGGTCCTCCAAACGTCTGAGGGTAAGGC
CCTTCAGCAGTATCCCTCAGAGCGAGAACTGCGTGGCATCTAA

Translation (550 aa):
MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSL
YSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDR
GLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLV
PPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQA
LNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVR
DQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREV
YVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGKALQQYPSERELRGI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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