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Report for CCDS1214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1214.1 Public Homo sapiens 1 USF1 24 110 108 CCDS HistoryNCBI Gene:7391Re-query CCDS DB by CCDS ID:1214.1Re-query CCDS DB by GeneID:7391See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368020.5 ENSP00000356999.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368020.5Link to Ensembl Protein Viewer:ENSP00000356999.1Re-query CCDS DB by Nucleotide ID:ENST00000368020Re-query CCDS DB by Protein ID:ENSP00000356999
Original member Current member EBI ENST00000368021.7 ENSP00000357000.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368021.7Link to Ensembl Protein Viewer:ENSP00000357000.3Re-query CCDS DB by Nucleotide ID:ENST00000368021Re-query CCDS DB by Protein ID:ENSP00000357000
Original member Current member NCBI NM_001276373.2 NP_001263302.1 Accepted alive Link to Nucleotide Sequence:NM_001276373.2Link to Protein Sequence:NP_001263302.1Re-query CCDS DB by Nucleotide ID:NM_001276373Re-query CCDS DB by Protein ID:NP_001263302Link to BLAST:NP_001263302.1
Original member Current member NCBI NM_007122.5 NP_009053.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007122.5Link to Protein Sequence:NP_009053.1Re-query CCDS DB by Nucleotide ID:NM_007122Re-query CCDS DB by Protein ID:NP_009053Link to BLAST:NP_009053.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263302.1 310 P22415-1 310 100% 0 0
NP_009053.1 310 P22415-1 310 100% 0 0

Chromosomal Locations for CCDS 1214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161039920 161040009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161040202 161040330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161040576 161040670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161040814 161040872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161041324 161041411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161041651 161041846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161042116 161042217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161042555 161042670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161042833 161042882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161043268 161043275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAAGGGGCAGCAGAAAACAGCTGAAACGGAAGAGGGGACAGTGCAGATTCAGGAAGGTGCAGTGGCTA
CTGGGGAAGACCCAACCAGTGTGGCTATTGCCAGCATCCAGTCAGCTGCCACCTTCCCTGACCCCAACGT
CAAGTACGTCTTCCGAACTGAGAATGGGGGCCAGGTGATGTACAGGGTGATCCAGGTGTCTGAGGGGCAG
CTGGATGGCCAAACTGAGGGAACTGGCGCCATCAGTGGCTACCCTGCCACTCAATCCATGACCCAGGCGG
TGATCCAGGGTGCTTTCACCAGTGATGATGCAGTTGACACGGAGGGGACAGCTGCTGAGACGCACTATAC
TTACTTCCCCAGCACGGCAGTGGGAGATGGGGCAGGGGGTACCACATCGGGGAGTACAGCTGCTGTTGTT
ACTACCCAGGGCTCAGAGGCACTGCTGGGGCAGGCGACCCCTCCTGGCACTGGTCAATTCTTTGTGATGA
TGTCACCACAAGAAGTACTGCAGGGAGGAAGCCAGCGCTCAATTGCCCCTAGGACTCACCCTTATTCCCC
GAAGTCAGAAGCTCCCCGGACGACTCGGGATGAGAAACGCAGGGCTCAGCATAATGAAGTGGAGCGTCGC
CGCCGAGACAAGATCAACAACTGGATCGTGCAGCTCTCCAAGATAATCCCAGACTGCTCTATGGAGAGCA
CCAAGTCTGGCCAGAGTAAAGGTGGGATTCTATCCAAAGCTTGTGATTATATCCAGGAGCTTCGGCAGAG
TAACCACCGCTTGTCTGAAGAACTGCAGGGACTTGACCAACTGCAGCTGGACAATGACGTGCTTCGACAA
CAGGTGGAAGATCTTAAAAACAAGAATCTGCTGCTTCGAGCTCAGTTGCGGCACCACGGATTAGAGGTCG
TCATCAAGAATGACAGCAACTAA

Translation (310 aa):
MKGQQKTAETEEGTVQIQEGAVATGEDPTSVAIASIQSAATFPDPNVKYVFRTENGGQVMYRVIQVSEGQ
LDGQTEGTGAISGYPATQSMTQAVIQGAFTSDDAVDTEGTAAETHYTYFPSTAVGDGAGGTTSGSTAAVV
TTQGSEALLGQATPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSPKSEAPRTTRDEKRRAQHNEVERR
RRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQ
QVEDLKNKNLLLRAQLRHHGLEVVIKNDSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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