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Report for CCDS14562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14562.1 Public Homo sapiens X LHFPL1 24 110 108 CCDS HistoryNCBI Gene:340596Re-query CCDS DB by CCDS ID:14562.1Re-query CCDS DB by GeneID:340596See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14562.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371968.8 ENSP00000361036.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371968.8Link to Ensembl Protein Viewer:ENSP00000361036.3Re-query CCDS DB by Nucleotide ID:ENST00000371968Re-query CCDS DB by Protein ID:ENSP00000361036
Original member Current member NCBI NM_178175.4 NP_835469.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178175.4Link to Protein Sequence:NP_835469.1Re-query CCDS DB by Nucleotide ID:NM_178175Re-query CCDS DB by Protein ID:NP_835469Link to BLAST:NP_835469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835469.1 220 Q86WI0-1 220 100% 0 0

Chromosomal Locations for CCDS 14562.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 112631420 112631601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112660627 112660725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112671009 112671390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGAGGAGCAGCCTGACCATGGTGGGAACCCTCTGGGCCTTCCTGTCCCTTGTTACTGCTGTGACCAGTT
CTACCAGTTACTTCCTACCTTACTGGCTCTTTGGATCCCAGATGGGGAAGCCAGTGTCATTCAGCACATT
CCGGAGGTGCAACTACCCTGTGCGGGGAGAGGGACACAGTCTGATCATGGTGGAAGAATGTGGGCGCTAT
GCCAGCTTCAATGCCATCCCAAGCCTGGCCTGGCAGATGTGCACAGTGGTGACAGGTGCCGGCTGTGCTC
TGCTGCTCCTGGTGGCACTAGCTGCTGTCCTGGGTTGCTGCATGGAGGAGCTCATCTCCAGAATGATGGG
ACGTTGCATGGGAGCAGCGCAGTTTGTTGGAGGGCTGCTGATAAGCTCAGGCTGTGCCTTATACCCTTTA
GGATGGAATAGCCCGGAGATAATGCAAACATGTGGGAATGTCTCCAATCAATTTCAGTTAGGTACCTGTC
GGCTTGGCTGGGCCTATTACTGTGCTGGAGGTGGAGCAGCTGCAGCCATGTTGATCTGCACCTGGCTCTC
TTGCTTTGCTGGAAGAAACCCCAAGCCTGTCATATTGGTGGAGAGCATCATGAGGAATACCAATTCTTAT
GCTATGGAGCTTGACCATTGCCTCAAACCTTGA

Translation (220 aa):
MRSSLTMVGTLWAFLSLVTAVTSSTSYFLPYWLFGSQMGKPVSFSTFRRCNYPVRGEGHSLIMVEECGRY
ASFNAIPSLAWQMCTVVTGAGCALLLLVALAAVLGCCMEELISRMMGRCMGAAQFVGGLLISSGCALYPL
GWNSPEIMQTCGNVSNQFQLGTCRLGWAYYCAGGGAAAAMLICTWLSCFAGRNPKPVILVESIMRNTNSY
AMELDHCLKP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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