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Report for CCDS2273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2273.1 Public Homo sapiens 2 HNRNPA3 24 110 108 CCDS HistoryNCBI Gene:220988Re-query CCDS DB by CCDS ID:2273.1Re-query CCDS DB by GeneID:220988See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2273.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392524.7 ENSP00000376309.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392524.7Link to Ensembl Protein Viewer:ENSP00000376309.2Re-query CCDS DB by Nucleotide ID:ENST00000392524Re-query CCDS DB by Protein ID:ENSP00000376309
Original member Current member EBI ENST00000435711.5 ENSP00000416340.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435711.5Link to Ensembl Protein Viewer:ENSP00000416340.1Re-query CCDS DB by Nucleotide ID:ENST00000435711Re-query CCDS DB by Protein ID:ENSP00000416340
Original member Current member EBI ENST00000676629.1 ENSP00000503593.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676629.1Link to Ensembl Protein Viewer:ENSP00000503593.1Re-query CCDS DB by Nucleotide ID:ENST00000676629Re-query CCDS DB by Protein ID:ENSP00000503593
Original member Current member EBI ENST00000678111.1 ENSP00000504135.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678111.1Link to Ensembl Protein Viewer:ENSP00000504135.1Re-query CCDS DB by Nucleotide ID:ENST00000678111Re-query CCDS DB by Protein ID:ENSP00000504135
Original member Current member EBI ENST00000679159.1 ENSP00000504152.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679159.1Link to Ensembl Protein Viewer:ENSP00000504152.1Re-query CCDS DB by Nucleotide ID:ENST00000679159Re-query CCDS DB by Protein ID:ENSP00000504152
Original member Current member NCBI NM_001330249.2 NP_001317178.1 Accepted alive Link to Nucleotide Sequence:NM_001330249.2Link to Protein Sequence:NP_001317178.1Re-query CCDS DB by Nucleotide ID:NM_001330249Re-query CCDS DB by Protein ID:NP_001317178Link to BLAST:NP_001317178.1
Original member Current member NCBI NM_194247.4 NP_919223.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_194247.4Link to Protein Sequence:NP_919223.1Re-query CCDS DB by Nucleotide ID:NM_194247Re-query CCDS DB by Protein ID:NP_919223Link to BLAST:NP_919223.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317178.1 378 P51991-1 378 100% 0 0
NP_919223.1 378 P51991-1 378 100% 0 0

Chromosomal Locations for CCDS 2273.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 177212800 177212871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177215539 177215661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177215750 177215896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177215978 177216188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177216503 177216592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177216676 177216771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177216860 177216940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177217705 177217845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177219037 177219159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 177219247 177219299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGTCGCCGCCGGGGGGAGG
AGGGCCATGATCCAAAGGAACCAGAGCAGTTGAGAAAACTGTTTATTGGTGGTCTGAGCTTTGAAACTAC
AGATGATAGTTTACGAGAACATTTTGAGAAATGGGGCACACTCACAGATTGTGTGGTAATGAGAGACCCC
CAAACAAAACGTTCCAGGGGCTTTGGTTTTGTGACTTATTCTTGTGTTGAAGAGGTGGATGCAGCAATGT
GTGCTCGACCACACAAGGTTGATGGGCGTGTAGTGGAACCAAAGAGAGCTGTTTCTAGAGAGGATTCTGT
AAAGCCTGGTGCCCATCTAACAGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAAGATACAGAAGAATAT
AATTTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAAGACAGGCAGAGTG
GAAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCT
GGATCACAGAGAGGTCGTGGAGGTGGATCTGGCAATTTTATGGGTCGCGGAGGGAACTTTGGAGGTGGTG
GAGGTAATTTTGGCCGTGGTGGAAACTTTGGTGGAAGAGGAGGCTATGGTGGTGGAGGTGGTGGCAGCAG
AGGTAGTTATGGAGGAGGTGATGGTGGATATAATGGATTTGGAGGTGATGGTGGCAACTATGGCGGTGGT
CCTGGTTATAGTAGTAGAGGGGGCTATGGTGGTGGTGGACCAGGATATGGAAACCAAGGTGGTGGATATG
GTGGAGGTGGAGGATATGATGGTTACAATGAAGGAGGAAATTTTGGCGGTGGTAACTATGGTGGTGGTGG
GAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAATCAAATTATGGACCCATGAAAGGGGGCAGT
TTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATG
GTAGCAGAAGGTTCTAA

Translation (378 aa):
MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDP
QTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY
NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSA
GSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGG
PGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGS
FGGRSSGSPYGGGYGSGGGSGGYGSRRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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