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Report for CCDS47291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47291.1 Public Homo sapiens 5 PCDHGA8 24 110 108 CCDS HistoryNCBI Gene:9708Re-query CCDS DB by CCDS ID:47291.1Re-query CCDS DB by GeneID:9708See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47291.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398604.3 ENSP00000381605.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398604.3Link to Ensembl Protein Viewer:ENSP00000381605.2Re-query CCDS DB by Nucleotide ID:ENST00000398604Re-query CCDS DB by Protein ID:ENSP00000381605
Original member Current member NCBI NM_032088.2 NP_114477.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032088.2Link to Protein Sequence:NP_114477.1Re-query CCDS DB by Nucleotide ID:NM_032088Re-query CCDS DB by Protein ID:NP_114477Link to BLAST:NP_114477.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114477.1 932 Q9Y5G5-1 932 100% 0 0

Chromosomal Locations for CCDS 47291.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141392814 141395237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGGCCGCTCCACAGAGTCGCCCCAGACGCGGCGAGCTGATCCTGCTGTGCGCGCTGCTGGGAACGCTGT
GG
GAAATCGGGAGGGGACAGATTCGCTACTCTGTGCCAGAAGAGACGGACAAAGGCTCCTTCGTGGGTAA
T
ATCTCCAAGGACCTGGGGCTGGACCCCCGGAAGCTGGCGAAGCACGGAGTCCGTATCGTCTCCAGAGGT
AGG
ACGCAGCTCTTTGCTCTGAACCCGCGCAGCGGCAGCTTGATCACCGCGGGCAGGATAGATCGGGAGG
AG
CTCTGCGCTCAGAGCCCGCGGTGTCTGATAAATATTAACACCCTGGTTGAGGATAAAGGAAAACTCTT
T
GGGGTAGAAATAGAAATAATTGATATTAACGATAATAACCCAAAATTCCAGGTCGAAGATCTAGAAGTA
AAA
ATTAACGAAATCGCGGTTCCTGGAGCACGTTATCCACTCCCAGAAGCTGTTGACCCGGATGTGGGCG
TG
AACTCCCTCCAGAGCTACCAGCTCAGCCCCAATCACCACTTCTCCCTGGACGTGCAGACTGGAGACAA
T
GGAGCCATAAACCCAGAGCTGGTGCTGGAGCGCGCCCTGGACAGGGAGGAAGAGGCTGCTCACCACCTG
GTC
CTCACGGCCTCGGATGGCGGCAAGCCGCCTCGCTCTAGCACAGTGCGCATCCACGTGACAGTGTTGG
AT
ACAAATGACAATGCCCCGGTTTTTCCTCACCCGATTTACCGAGTGAAAGTCCTTGAGAACATGCCCCC
A
GGCACGCGGCTGCTTACTGTAACAGCCAGCGACCCGGATGAGGGAATCAACGGAAAAGTGGCATACAAA
TTC
CGGAAAATTAATGAAAAACAAACTCCGTTATTCCAGCTTAATGAAAATACTGGGGAAATATCAATAG
CA
AAAAGTCTAGATTATGAAGAATGTTCATTTTATGAAATGGAAATACAAGCCGAAGATGTGGGGGCACT
T
CTGGGGAGGACCAAATTGCTCATTTCGGTGGAAGATGTAAATGACAATAGACCAGAAGTGATCATTACG
TCT
TTGTTTAGCCCAGTGTTAGAAAATTCTCTTCCCGGGACAGTAATTGCCTTCTTGAGTGTGCATGACC
AA
GACTCTGGAAAGAATGGTCAAGTTGTCTGTTACACACGTGATAATTTACCTTTTAAATTAGAAAAGTC
A
ATAGGTAATTATTATAGATTAGTGACAAGGAAATATTTGGACCGAGAAAATGTCTCTATCTACAATATC
ACA
GTGATGGCCTCAGATCTAGGAACACCACCTCTGTCCACTGAAACTCAAATCGCTCTGCACGTGGCAG
AC
ATTAACGACAACCCTCCTACTTTCCCTCATGCCTCCTACTCAGCGTATATCCTAGAGAACAACCTGAG
A
GGAGCCTCCATCTTTTCCTTGACTGCACACGACCCCGACAGCCAGGAGAATGCCCAGGTCACTTACTCT
GTG
ACCGAGGACACGCTGCAGGGGGCGCCCCTGTCCTCGTATATCTCCATCAACTCTGACACCGGTGTCC
TG
TATGCGCTGCAATCTTTCGACTATGAGCAGATCCGAGACCTGCAGCTACTGGTAACAGCCAGCGACAG
C
GGGGACCCGCCCCTCAGCAGCAACATGTCACTGAGCCTGTTCGTGCTGGACCAGAATGACAACGCGCCC
GAG
ATCCTGTACCCCGCCCTCCCCACAGACGGTTCCACTGGCGTGGAGCTGGCGCCCCGCTCCGCAGAGC
GT
GGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCGGGCCAGAACGCCTGGCTGTCCTACCG
C
CTGCTCAAGGCCAGCGAGCCGGGACTCTTCTCGGTGGGTCTGCACACGGGCGAGGTGCGCACGGCGCGA
GCC
CTGCTGGACAGAGATGCGCTCAAGCAGAGCCTCGTGGTGGCCGTCCAGGACCATGGCCAGCCCCCTC
TC
TCCGCCACTGTCACGCTCACCGTAGCCGTGGCTGACAGCATCCCCGAAGTCCTGACCGAGTTGGGCAG
T
CTGAAGCCTTCGGTCGACCCGAACGATTCGAGCCTTACACTCTATCTCGTGGTGGCAGTGGCTGCCATC
TCC
TGTGTCTTCCTCGCCTTTGTCGCTGTGCTTCTGGGGCTCAGGCTGAGGCGCTGGCACAAGTCACGCC
TG
CTCCAGGATTCCGGTGGCAGATTGGTAGGCGTGCCTGCCTCACATTTTGTGGGTGTTGAGGAGGTACA
G
GCTTTCCTGCAGACCTATTCCCAGGAAGTCTCCCTCACCGCCGACTCGCGGAAGAGTCACCTGATCTTT
CCC
CAGCCCAACTACGCAGACATGCTCATCAGTCAGGAGGGCTGTGAGAAAAATGATTCTTTGTTAACAT
CC
GTAGATTTTCATGAATATAAGAATGAAGCTGATCATGGTCAGCAAGCCCCGCCCAACACGGACTGGCG
T
TTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAAC
AAC
CAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCT
CC
ACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCA
C
GTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAG
CGG
GATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA


Translation (932 aa):
MAAPQSRPRRGELILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRG
R
TQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEV
K
INEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAHHL
V
LTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYK
F
RKINEKQTPLFQLNENTGEISIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIIT
S
LFSPVLENSLPGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNI
T
VMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYS
V
TEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAP
E
ILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTAR
A
LLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAI
S
CVFLAFVAVLLGLRLRRWHKSRLLQDSGGRLVGVPASHFVGVEEVQAFLQTYSQEVSLTADSRKSHLIF
P
QPNYADMLISQEGCEKNDSLLTSVDFHEYKNEADHGQ
QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
N
QFDTEMLQAMILASAS
EAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
R
DGKAPAGGNGNKKKSGKKEKK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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