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![](/corehtml/transparent.gif) |
Report for CCDS43553.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
43553.1 |
Public |
Homo sapiens |
7 |
COL28A1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:340267](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:43553.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:340267](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 43553.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000399429.8 |
ENSP00000382356.3 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000399429.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000382356.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000399429](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000382356](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001037763.3 |
NP_001032852.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001037763.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001032852.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001037763](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001032852](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001032852.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001032852.2 |
1125 |
Q2UY09-1 |
1125 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 43553.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3378 nt): ATGTGGAACAGATATTTTGTCTTCTATCTCCTGCTTTTGTCAGCGTTTACGAGTCAAACAGTATCCGGAC AAAGAAAGAAAGGACCAAAATCAAATTTGCTTGCAAGGAAAAGTGATGTCCAGGGCTCCATTTGTTTCAT AGATATTGTCTTCATCGTGGACAGCTCTGAAAGTTCTAAAATTGCCCTCTTTGATAAACAGAAAGATTTT GTGGATAGCTTGAGTGACAAGATTTTCCAATTGACTCCTGGTCGCTCCTTGGAATATGACATCAAACTGG CAGCCCTTCAGTTTAGCAGCTCTGTCCAAATTGATCCACCTTTTTCTTCCTGGAAGGACCTGCAGACATT TAAGCAGAAGGTCAAGTCTATGAATTTAATAGGGCAAGGTACCTTCTCTTATTATGCCATTTCCAATGCC ACTAGGCTACTTAAGAGAGAAGGGCGTAAGGATGGTGTGAAAGTGGTTTTGCTGATGACTGATGGCATCG ACCATCCAAAGAATCCAGATGTTCAAAGTATTTCTGAAGATGCCAGAATTTCAGGAATATCATTTATCAC CATTGCACTTTCTACGGTAGTCAATGAAGCCAAACTTCGTTTGATTTCTGGGGATTCATCCAGTGAACCC ACTTTACTGTTGAGTGATCCAACCCTTGTAGATAAAATTCAAGATCGTCTGGATATCTTATTTGAAAAGA AGTGTGAACGCAAGATTTGTGAATGTGAGAAGGGAGATCCAGGTGATCCAGGGCCTCCTGGTACACATGG AAATCCAGGTATCAAAGGTGAGCGAGGACCAAAAGGAAACCCGGGCAACGCTCAAAAAGGAGAAGCTGGA GAAAGAGGTCCAGGGGGAATTCCTGGGTACAAGGGTGACAAGGGTGAACGTGGGGAATGTGGTAAACCAG GGATAAAAGGTGACAAGGGATCCCCAGGGCCATATGGACCAAAGGGACCCAGAGGAATTCAGGGAATTAC TGGACCTCCAGGAGACCCAGGCCCAAAGGGGTTTCAAGGCAATAAGGGTGAGCCAGGTCCTCCTGGTCCT TATGGTTCTCCAGGAGCTCCTGGAATTGGACAGCAAGGTATTAAGGGAGAAAGAGGCCAAGAAGGAAGAC CGGGAGCTCCAGGACCCATTGGAGTTGGTGAGCCTGGACAGCCAGGTCCCCGTGGTCCTGAGGGAGTACC AGGAGAGAGGGGCTTACCCGGAGAAGGATTTCCAGGACCAAAGGGTGAAAAAGGTTCTGAAGGACCAACT GGCCCACAGGGATTACAAGGCCTGTCAATCAAAGGGGAGAAGGGGGATATAGGACCTGTGGGACCCCAAG GACCAATGGGTATCCCTGGAATCGGGAGTCAAGGGGAACAGGGAATCCAAGGTCCTATTGGTCCACCTGG TCCACAAGGGCCCGCAGGACAGGGCTTACCTGGTTCCAAGGGAGAAGTAGGCCAAATGGGACCTACAGGC CCTCGAGGACCAGTGGGAATTGGAGTACAAGGTCCAAAGGGAGAGCCAGGCTCAATAGGGCTCCCAGGAC AACCAGGAGTACCAGGAGAAGATGGAGCTGCAGGGAAGAAGGGAGAAGCGGGGCTTCCGGGAGCAAGAGG CCCAGAAGGACCACCTGGAAAAGGACAGCCTGGCCCCAAGGGTGACGAAGGCAAGAAAGGGAGCAAAGGA AATCAAGGACAGAGGGGACTTCCAGGGCCCGAAGGACCAAAGGGTGAACCGGGCATTATGGGCCCTTTTG GAATGCCTGGAACATCAATTCCTGGACCACCTGGGCCAAAGGGAGATAGAGGAGGACCTGGGATACCTGG ATTTAAGGGAGAACCTGGACTTTCTATTCGAGGACCAAAGGGTGTCCAAGGCCCTCGGGGACCAGTGGGT GCTCCAGGACTCAAAGGTGATGGCTATCCTGGTGTGCCTGGACCTCGTGGATTACCAGGACCCCCTGGGC CGATGGGTTTACGTGGAGTGGGAGACACTGGAGCAAAGGGAGAGCCTGGGGTCAGAGGCCCTCCAGGTCC TTCTGGGCCTCGGGGCGTAGGAACCCAAGGGCCAAAGGGTGATACTGGGCAGAAAGGCTTGCCTGGCCCT CCTGGCCCCCCTGGCTATGGATCACAGGGAATTAAAGGGGAACAAGGACCACAAGGCTTCCCAGGCCCAA AGGGCACAATGGGCCATGGCCTCCCAGGCCAGAAGGGAGAGCACGGAGAACGGGGCGATGTGGGAAAGAA AGGTGATAAAGGAGAAATTGGAGAGCCTGGATCTCCAGGAAAACAGGGTTTACAAGGACCCAAAGGAGAC CTAGGACTTACAAAAGAAGAAATTATCAAACTTATTACAGAAATATGTGGTTGTGGGCCCAAATGCAAAG AGACTCCACTAGAGCTGGTGTTTGTGATCGACAGCTCAGAAAGCGTGGGGCCAGAGAACTTTCAGATCAT TAAAAATTTTGTGAAGACTATGGCTGACCGGGTTGCTCTGGACCTTGCCACGGCCCGCATAGGCATAATC AACTATAGCCATAAGGTGGAGAAGGTGGCTAATTTGAAGCAGTTCTCCAGCAAGGATGACTTCAAGTTGG CTGTGGACAACATGCAGTATCTGGGGGAAGGCACATACACAGCCACTGCTCTGCAAGCAGCCAACGACAT GTTTGAAGATGCAAGGCCAGGTGTAAAAAAAGTGGCCTTGGTCATCACTGATGGACAGACAGATTCTCGT GATAAAGAGAAACTGACAGAGGTGGTGAAGAATGCCAGTGACACCAATGTGGAGATATTTGTGATAGGGG TGGTGAAGAAAAATGATCCCAACTTTGAAATATTCCACAAAGAAATGAATCTAATTGCTACTGACCCAGA GCATGTTTACCAGTTTGATGATTTCTTTACCCTGCAAGACACCCTGAAGCAAAAATTGTTTCAAAAAATT TGTGAGGATTTTGATTCCTATCTCGTTCAAATTTTTGGTTCATCGTCACCTCAACCTGGATTTGGGATGT CAGGGGAAGAACTCAGTGAATCTACTCCAGAGCCTCAAAAAGAAATTTCTGAGTCATTGAGTGTCACCAG AGACCAGGATGAAGATGATAAGGCTCCAGAGCCAACGTGGGCTGATGATCTGCCTGCCACTACCTCATCT GAGGCCACCACCACCCCCAGGCCACTGCTCAGCACCCCTGTGGATGGGGCAGAGGATCCTAGATGTTTGG AAGCCTTGAAGCCTGGAAACTGTGGTGAATATGTGGTTCGATGGTATTATGACAAACAGGTCAACTCTTG TGCCCGATTTTGGTTCAGTGGCTGTAATGGCTCAGGAAATAGATTCAACAGTGAAAAGGAATGTCAAGAA ACCTGCATTCAAGGATGA
Translation (1125 aa): MWNRYFVFYLLLLSAFTSQTVSGQRKKGPKSNLLARKSDVQGSICFIDIVFIVDSSESSKIALFDKQKDF VDSLSDKIFQLTPGRSLEYDIKLAALQFSSSVQIDPPFSSWKDLQTFKQKVKSMNLIGQGTFSYYAISNA TRLLKREGRKDGVKVVLLMTDGIDHPKNPDVQSISEDARISGISFITIALSTVVNEAKLRLISGDSSSEP TLLLSDPTLVDKIQDRLDILFEKKCERKICECEKGDPGDPGPPGTHGNPGIKGERGPKGNPGNAQKGEAG ERGPGGIPGYKGDKGERGECGKPGIKGDKGSPGPYGPKGPRGIQGITGPPGDPGPKGFQGNKGEPGPPGP YGSPGAPGIGQQGIKGERGQEGRPGAPGPIGVGEPGQPGPRGPEGVPGERGLPGEGFPGPKGEKGSEGPT GPQGLQGLSIKGEKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTG PRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKG NQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVG APGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGP PGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGD LGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGII NYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSR DKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKI CEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSS EATTTPRPLLSTPVDGAEDPRCLEALKPGNCGEYVVRWYYDKQVNSCARFWFSGCNGSGNRFNSEKECQE TCIQG
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