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Report for CCDS13939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13939.1 Public Homo sapiens 22 MPST 24 110 108 CCDS HistoryNCBI Gene:4357Re-query CCDS DB by CCDS ID:13939.1Re-query CCDS DB by GeneID:4357See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13939.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341116.7 ENSP00000342333.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341116.7Link to Ensembl Protein Viewer:ENSP00000342333.3Re-query CCDS DB by Nucleotide ID:ENST00000341116Re-query CCDS DB by Protein ID:ENSP00000342333
Original member Current member EBI ENST00000397225.2 ENSP00000380402.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397225.2Link to Ensembl Protein Viewer:ENSP00000380402.2Re-query CCDS DB by Nucleotide ID:ENST00000397225Re-query CCDS DB by Protein ID:ENSP00000380402
Original member Current member EBI ENST00000404802.7 ENSP00000383950.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404802.7Link to Ensembl Protein Viewer:ENSP00000383950.3Re-query CCDS DB by Nucleotide ID:ENST00000404802Re-query CCDS DB by Protein ID:ENSP00000383950
Original member Current member EBI ENST00000401419.7 ENSP00000384812.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401419.7Link to Ensembl Protein Viewer:ENSP00000384812.3Re-query CCDS DB by Nucleotide ID:ENST00000401419Re-query CCDS DB by Protein ID:ENSP00000384812
Original member Current member NCBI NM_001013436.4 NP_001013454.1 Accepted alive Link to Nucleotide Sequence:NM_001013436.4Link to Protein Sequence:NP_001013454.1Re-query CCDS DB by Nucleotide ID:NM_001013436Re-query CCDS DB by Protein ID:NP_001013454Link to BLAST:NP_001013454.1
Original member Current member NCBI NM_001130517.4 NP_001123989.1 Accepted alive Link to Nucleotide Sequence:NM_001130517.4Link to Protein Sequence:NP_001123989.1Re-query CCDS DB by Nucleotide ID:NM_001130517Re-query CCDS DB by Protein ID:NP_001123989Link to BLAST:NP_001123989.1
Original member Current member NCBI NM_001369904.2 NP_001356833.1 Accepted alive Link to Nucleotide Sequence:NM_001369904.2Link to Protein Sequence:NP_001356833.1Re-query CCDS DB by Nucleotide ID:NM_001369904Re-query CCDS DB by Protein ID:NP_001356833Link to BLAST:NP_001356833.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013454.1 297 P25325-1 297 100% 0 0
NP_001123989.1 297 P25325-1 297 100% 0 0
NP_001356833.1 297 P25325-1 297 100% 0 0

Chromosomal Locations for CCDS 13939.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 37024216 37024810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37029216 37029514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGCTTCGCCGCAGCTCTGCCGCGCGCTGGTGTCGGCGCAATGGGTGGCGGAGGCGCTGCGGGCCCCGC
GCGCTGGGCAGCCTCTGCAGCTGCTGGACGCCTCCTGGTACCTGCCGAAGCTGGGGCGCGACGCGCGACG
CGAGTTCGAGGAGCGCCACATCCCGGGCGCCGCTTTCTTCGACATCGACCAGTGCAGCGACCGCACCTCG
CCCTACGACCACATGCTGCCCGGGGCCGAGCATTTCGCGGAGTACGCAGGCCGCCTGGGCGTGGGCGCGG
CCACCCACGTCGTGATCTACGACGCCAGCGACCAGGGCCTCTACTCCGCCCCGCGCGTCTGGTGGATGTT
CCGCGCCTTCGGCCACCACGCCGTGTCACTGCTTGATGGCGGCCTCCGCCACTGGCTGCGCCAGAACCTC
CCGCTCAGCTCCGGCAAGAGCCAACCTGCTCCCGCCGAGTTCCGCGCTCAGCTCGACCCCGCCTTCATCA
AGACCTACGAGGACATCAAGGAGAACCTGGAATCCCGGCGCTTCCAGGTGGTGGACTCCCGAGCCACTGG
CAGGTTCCGCGGCACCGAGCCCGAGCCCCGAGACGGCATTGAACCTGGCCACATCCCAGGTACCGTGAAC
ATCCCCTTCACAGACTTCCTGAGCCAGGAGGGGCTGGAGAAGAGCCCTGAGGAGATCCGCCATCTGTTCC
AGGAGAAGAAAGTGGACCTGTCTAAGCCACTGGTGGCCACGTGTGGCTCTGGCGTCACAGCCTGCCACGT
GGCACTAGGGGCCTACCTCTGCGGCAAGCCAGACGTGCCCATCTACGATGGCTCCTGGGTGGAGTGGTAC
ATGCGCGCCCGGCCCGAGGATGTCATCTCAGAGGGCCGGGGGAAGACCCACTGA

Translation (297 aa):
MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTS
PYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNL
PLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVN
IPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWY
MRARPEDVISEGRGKTH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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