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Report for CCDS78202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78202.1 Public Homo sapiens 7 PAPOLB 24 110 108 CCDS HistoryNCBI Gene:56903Re-query CCDS DB by CCDS ID:78202.1Re-query CCDS DB by GeneID:56903See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78202.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000404991.2 ENSP00000384700.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404991.2Link to Ensembl Protein Viewer:ENSP00000384700.2Re-query CCDS DB by Nucleotide ID:ENST00000404991Re-query CCDS DB by Protein ID:ENSP00000384700
Original member Current member NCBI NM_020144.5 NP_064529.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020144.5Link to Protein Sequence:NP_064529.4Re-query CCDS DB by Nucleotide ID:NM_020144Re-query CCDS DB by Protein ID:NP_064529Link to BLAST:NP_064529.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064529.4 637 Q9NRJ5 637 100% 0 0

Chromosomal Locations for CCDS 78202.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4859897 4861810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGATGCCGTTTCCGGTGACAACCCAGGGACCACCGCAGCCGGCGCCGCCGCCGAATCGCTACGGCGTCT
CCTCGCCTATCAGTCTAGCGGTCCCCAAGGAGACGGACTGCCTCCTCACCCAGAGGCTAATAGAAACCCT
CAGGCCCTTCGGGGTCTTCGAAGAGGAAGAGGAACTGCAGCGCAGGATTTTAGTTTTGGAAAAATTAAAT
AATCTGGTAAAGGAATGGATACGCGAAATCAGTGAAAGCAAGAGTCTTCCCCAGTCTGTAATTGAAAACG
TTGGAGGAAAGATTTTTACGTTTGGCTCTTACAGATTAGGAGTACATACGAAAGGCGCAGATATTGACGC
CTTGTGCGTTGCACCAAGTCATGTGGATCGAAGCGACTTTTTCACCTCATTCTATGCTAAACTGAAACTA
CAGGAGGAAGTGAAAGATTTAAGGGCTGTCGAGGAGGCATTTGTGCCAGTTATCAAACTGTGTTTTGATG
GGATAGAGATTGATATTTTATTTGCAAGATTAGCACTACAGACTATTCCAGAAGATTTGGACTTAAGAGA
TGACAGTCTACTTAAAAATTTAGACATTAGATGCATAAGAAGCCTTAATGGTTGCCGGGTAACCGATGAA
ATTTTACATCTAGTGCCAAACATTGACAACTTCAGGCTGACTCTGAGAGCCATCAAACTGTGGGCCAAGT
GCCACAATATCTATTCCAATATATTAGGTTTCCTCGGAGGTGTTTCCTGGGCCATGCTAGTAGCAAGAAC
TTGTCAGCTTTATCCAAATGCAGTAGCGTCAACTCTTGTACGGAAATTCTTCTTGGTATTTTCAGAATGG
GAATGGCCAAACCCAGTGTTACTGAAGGAGCCTGAAGAACGGAATCTTAATTTGCCTGTATGGGACCCAA
GAGTAAATCCCAGTGATAGGTACCATCTTATGCCTATCATCACACCAGCATACCCACAGCAGAACTCCAC
ATACAACGTGTCTATTTCAACCAGGATGGTCATGATTGAGGAGTTTAAACAGGGGCTTGCTATCACACAC
GAGATTTTGCTAAGTAAGGCAGAGTGGTCCAAACTCTTTGAAGCTCCAAGCTTCTTTCAAAAGTACAAGC
ATTATATTGTACTTCTGGCAAGTGCATCAACAGAAAAACAACATTTAGAATGGGTGGGCTTGGTGGAATC
AAAGATCCGAATCCTGGTTGGGAGCTTGGAGAAGAATGAATTTATTACACTGGCACATGTGAATCCACAG
TCATTTCCAGCACCCAAAGAAAATCCTGATATGGAAGAATTTCGTACAATGTGGGTGATTGGGTTAGGGC
TAAAAAAGCCAGATAATTCTGAAATTCTCAGCATTGATCTCACCTATGATATCCAGTCTTTCACAGATAC
TGTTTATAGGCAAGCAGTGAATAGTAAGATGTTTGAGATGGGTATGAAAATTACTGCAATGCATTTAAGA
AGAAAGGAACTTCACCAGCTGCTGCCTCATCATGTGCTTCAGGACAAGAAAGCACACTCAACAGAAGGTA
GAAGATTGACAGATTTGAACGACAGCAGCTTTGACTTGTCTGCAGGCTGTGAAAACAGCATGTCTGTGCC
TTCATCTACTAGCACTATGAAGACAGGCCCATTGATTAGCAGTTCTCAGGGTAGAAACAGTCCTGCCTTG
GCTGTAATGACAGCATCTGTGGCTAACATACAGGCTACTGAATTTTCCTTGCAACAGGTGAATACCAATG
AAAGTTCAGGGGTTGCATTAAACGAAAGTATTCCTCACGCTGTCTCTCAGCCTGCCATTTCTCCATCACC
AAAGGCCATGGTCGCCAGAGTTGTTTCTTCAACATGTCTCATAAGCCATCCAGACCTTCAGGAAACTCAG
CAACAAACATATCTAATCCTATAG

Translation (637 aa):
MMPFPVTTQGPPQPAPPPNRYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQRRILVLEKLN
NLVKEWIREISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPSHVDRSDFFTSFYAKLKL
QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDE
ILHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLVFSEW
EWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITH
EILLSKAEWSKLFEAPSFFQKYKHYIVLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQ
SFPAPKENPDMEEFRTMWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEMGMKITAMHLR
RKELHQLLPHHVLQDKKAHSTEGRRLTDLNDSSFDLSAGCENSMSVPSSTSTMKTGPLISSSQGRNSPAL
AVMTASVANIQATEFSLQQVNTNESSGVALNESIPHAVSQPAISPSPKAMVARVVSSTCLISHPDLQETQ
QQTYLIL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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