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Report for CCDS43193.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43193.3 Public Homo sapiens 3 CEP19 24 110 108 CCDS HistoryNCBI Gene:84984Re-query CCDS DB by CCDS ID:43193.3Re-query CCDS DB by GeneID:84984See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 43193.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 43193.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409690.5 ENSP00000387209.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409690.5Link to Ensembl Protein Viewer:ENSP00000387209.4Re-query CCDS DB by Nucleotide ID:ENST00000409690Re-query CCDS DB by Protein ID:ENSP00000387209
Original member Current member NCBI NM_001379469.1 NP_001366398.1 Accepted alive Link to Nucleotide Sequence:NM_001379469.1Link to Protein Sequence:NP_001366398.1Re-query CCDS DB by Nucleotide ID:NM_001379469Re-query CCDS DB by Protein ID:NP_001366398Link to BLAST:NP_001366398.1
Original member Current member NCBI NM_001379470.1 NP_001366399.1 Accepted alive Link to Nucleotide Sequence:NM_001379470.1Link to Protein Sequence:NP_001366399.1Re-query CCDS DB by Nucleotide ID:NM_001379470Re-query CCDS DB by Protein ID:NP_001366399Link to BLAST:NP_001366399.1
Original member Current member NCBI NM_032898.5 NP_116287.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032898.5Link to Protein Sequence:NP_116287.3Re-query CCDS DB by Nucleotide ID:NM_032898Re-query CCDS DB by Protein ID:NP_116287Link to BLAST:NP_116287.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001366398.1 163 Q96LK0 163 100% 0 0
NP_001366399.1 163 Q96LK0 163 100% 0 0
NP_116287.3 163 Q96LK0 163 100% 0 0

Chromosomal Locations for CCDS 43193.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 196707551 196707912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 196708528 196708657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGATGTGCACTGCCAAGAAATGTGGGATTAGGTTTCAGCCTCCAGCTATTATCTTAATCTATGAGAGTG
AAATCAAGGGGAAAATTCGCCAGCGCATTATGCCAGTTCGAAACTTTTCAAAGTTTTCAGATTGCACCAG
AGCTGCTGAACAATTAAAGAATAATCCGCGACACAAGAGTTACCTAGAACAAGTATCCCTGAGGCAGCTA
GAGAAGCTATTCAGTTTTTTACGAGGTTACTTGTCGGGGCAGAGTCTGGCAGAAACAATGGAACAAATTC
AACGGGAAACAACCATTGATCCTGAGGAAGACCTGAACAAACTAGATGACAAGGAGCTTGCCAAAAGAAA
GAGCATCATGGATGAACTTTTTGAGAAAAATCAGAAGAAGAAGGATGATCCAAATTTTGTTTATGACATT
GAGGTTGAATTTCCACAGGACGATCAACTGCAGTCCTGTGGCTGGGACACAGAGTCAGCTGATGAGTTCT
GA

Translation (163 aa):
MMCTAKKCGIRFQPPAIILIYESEIKGKIRQRIMPVRNFSKFSDCTRAAEQLKNNPRHKSYLEQVSLRQL
EKLFSFLRGYLSGQSLAETMEQIQRETTIDPEEDLNKLDDKELAKRKSIMDELFEKNQKKKDDPNFVYDI
EVEFPQDDQLQSCGWDTESADEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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