NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46983.1 Public Homo sapiens 3 FGF12 24 110 108 CCDS HistoryNCBI Gene:2257Re-query CCDS DB by CCDS ID:46983.1Re-query CCDS DB by GeneID:2257See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46983.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000445105.7 ENSP00000393686.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000445105.7Link to Ensembl Protein Viewer:ENSP00000393686.1Re-query CCDS DB by Nucleotide ID:ENST00000445105Re-query CCDS DB by Protein ID:ENSP00000393686
Original member Current member EBI ENST00000450716.5 ENSP00000397635.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450716.5Link to Ensembl Protein Viewer:ENSP00000397635.1Re-query CCDS DB by Nucleotide ID:ENST00000450716Re-query CCDS DB by Protein ID:ENSP00000397635
Original member Current member EBI ENST00000683935.1 ENSP00000507098.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683935.1Link to Ensembl Protein Viewer:ENSP00000507098.1Re-query CCDS DB by Nucleotide ID:ENST00000683935Re-query CCDS DB by Protein ID:ENSP00000507098
Original member Current member EBI ENST00000683451.1 ENSP00000508366.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683451.1Link to Ensembl Protein Viewer:ENSP00000508366.1Re-query CCDS DB by Nucleotide ID:ENST00000683451Re-query CCDS DB by Protein ID:ENSP00000508366
Original member Current member NCBI NM_004113.6 NP_004104.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004113.6Link to Protein Sequence:NP_004104.3Re-query CCDS DB by Nucleotide ID:NM_004113Re-query CCDS DB by Protein ID:NP_004104Link to BLAST:NP_004104.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004104.3 181 P61328-2 181 100% 0 0

Chromosomal Locations for CCDS 46983.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 192144009 192144127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 192170458 192170656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 192335361 192335464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 192360428 192360538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 192727181 192727193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGAGAGCAAAGAACCCCAGCTCAAAGGGATTGTGACAAGGTTATTCAGCCAGCAGGGATACTTCCTGC
AGATGCACCCAGATGGTACCATTGATGGGACCAAGGACGAAAACAGCGACTACACTCTCTTCAATCTAAT
TCCCGTGGGCCTGCGTGTAGTGGCCATCCAAGGAGTGAAGGCTAGCCTCTATGTGGCCATGAATGGTGAA
GGCTATCTCTACAGTTCAGATGTTTTCACTCCAGAATGCAAATTCAAGGAATCTGTGTTTGAAAACTACT
ATGTGATCTATTCTTCCACACTGTACCGCCAGCAAGAATCAGGCCGAGCTTGGTTTCTGGGACTCAATAA
AGAAGGTCAAATTATGAAGGGGAACAGAGTGAAGAAAACCAAGCCCTCATCACATTTTGTACCGAAACCT
ATTGAAGTGTGTATGTACAGAGAACCATCGCTACATGAAATTGGAGAAAAACAAGGGCGTTCAAGGAAAA
GTTCTGGAACACCAACCATGAATGGAGGCAAAGTTGTGAATCAAGATTCAACATAG

Translation (181 aa):
MESKEPQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGE
GYLYSSDVFTPECKFKESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKTKPSSHFVPKP
IEVCMYREPSLHEIGEKQGRSRKSSGTPTMNGGKVVNQDST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH