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Report for CCDS3125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3125.1 Public Homo sapiens 3 PLS1 24 110 108 CCDS HistoryNCBI Gene:5357Re-query CCDS DB by CCDS ID:3125.1Re-query CCDS DB by GeneID:5357See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3125.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337777.7 ENSP00000336831.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337777.7Link to Ensembl Protein Viewer:ENSP00000336831.3Re-query CCDS DB by Nucleotide ID:ENST00000337777Re-query CCDS DB by Protein ID:ENSP00000336831
Original member Current member EBI ENST00000457734.7 ENSP00000387890.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000457734.7Link to Ensembl Protein Viewer:ENSP00000387890.2Re-query CCDS DB by Nucleotide ID:ENST00000457734Re-query CCDS DB by Protein ID:ENSP00000387890
Original member Current member EBI ENST00000497002.1 ENSP00000418700.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000497002.1Link to Ensembl Protein Viewer:ENSP00000418700.1Re-query CCDS DB by Nucleotide ID:ENST00000497002Re-query CCDS DB by Protein ID:ENSP00000418700
Original member Current member NCBI NM_001145319.2 NP_001138791.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145319.2Link to Protein Sequence:NP_001138791.1Re-query CCDS DB by Nucleotide ID:NM_001145319Re-query CCDS DB by Protein ID:NP_001138791Link to BLAST:NP_001138791.1
Original member Current member NCBI NM_001172312.2 NP_001165783.1 Accepted alive Link to Nucleotide Sequence:NM_001172312.2Link to Protein Sequence:NP_001165783.1Re-query CCDS DB by Nucleotide ID:NM_001172312Re-query CCDS DB by Protein ID:NP_001165783Link to BLAST:NP_001165783.1
Original member Current member NCBI NM_002670.3 NP_002661.2 Accepted alive Link to Nucleotide Sequence:NM_002670.3Link to Protein Sequence:NP_002661.2Re-query CCDS DB by Nucleotide ID:NM_002670Re-query CCDS DB by Protein ID:NP_002661Link to BLAST:NP_002661.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138791.1 629 Q14651 629 100% 0 0
NP_001165783.1 629 Q14651 629 100% 0 0
NP_002661.2 629 Q14651 629 100% 0 0

Chromosomal Locations for CCDS 3125.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142664238 142664307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142669390 142669553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142670993 142671122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142676157 142676289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142678032 142678113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142684006 142684171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142684253 142684395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142686284 142686376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142689618 142689813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142694469 142694547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142697953 142698067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142703868 142704001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142704463 142704586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142711501 142711625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142711872 142712007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGGAAAACAGTACTACTACCATTTCTCGGGAGGAGCTTGAAGAACTACAAGAGGCATTTAATAAAATAG
ATATTGACAATAGTGGGTATGTCAGTGACTATGAACTTCAAGACCTGTTTAAGGAAGCAAGCCTTCCTCT
GCCTGGCTACAAGGTGCGCGAGATTGTGGAGAAAATTCTATCAGTTGCTGACAGCAACAAAGATGGCAAA
ATCAGTTTTGAAGAGTTTGTGTCACTAATGCAAGAATTAAAAAGCAAAGATATCAGCAAAACATTCCGAA
AAATAATTAACAAGAGGGAAGGGATTACTGCTATTGGAGGAACTTCAACTATTTCCAGTGAGGGCACACA
GCATTCTTATTCAGAGGAAGAAAAAGTGGCTTTTGTTAACTGGATAAACAAAGCCCTGGAGAATGACCCT
GACTGTAAGCATCTTATACCCATGAATCCCAATGATGATAGTCTTTTCAAGTCACTTGCAGATGGCATCC
TTCTTTGCAAAATGATCAACTTATCTGAACCAGATACAATTGATGAAAGAGCCATCAATAAGAAAAAGCT
CACGCCATTCACTATTTCTGAAAATTTAAACCTAGCTCTGAATTCTGCCTCAGCCATTGGTTGTACAGTG
GTCAACATTGGTGCATCAGATCTCAAAGAAGGAAAACCTCACTTGGTCTTGGGACTTCTCTGGCAGATCA
TCAAAGTTGGCCTTTTTGCTGATATTGAGATTTCCAGGAATGAAGCTCTGATTGCATTGTTAAATGAAGG
TGAGGAACTAGAGGAGCTGATGAAGCTTTCTCCCGAGGAATTACTGCTGCGATGGGTGAACTACCATCTG
ACCAATGCAGGATGGCATACCATCAGCAACTTCAGCCAAGACATTAAGGACTCGAGAGCCTATTTTCATC
TGCTTAATCAGATTGCCCCTAAAGGTGGGGAAGATGGACCTGCCATTGCCATTGACCTTTCAGGAATTAA
TGAGACAAATGACCTGAAGCGTGCTGGACTCATGCTTCAAGAAGCAGATAAACTGGGCTGCAAACAGTTT
GTTACTCCTGCAGATGTGGTTTCAGGCAATCCTAAACTTAATTTAGCTTTTGTAGCTAATTTGTTTAACA
CATACCCGTGCCTGCACAAGCCGAATAATAATGACATCGATATGAATTTACTGGAAGGAGAGAGCAAGGA
AGAGAGAACATTTCGGAACTGGATGAATTCCTTGGGAGTCAACCCATACATTAATCATTTGTACAGTGAC
CTTGCAGATGCTTTAGTGATCTTTCAGCTCTATGAGATGATCCGAGTGCCAGTCAACTGGAGCCATGTCA
ACAAACCTCCTTATCCTGCCCTTGGAGGGAACATGAAGAAGATTGAAAACTGTAACTATGCAGTGGAACT
TGGGAAGAACAAGGCCAAATTCTCCTTGGTTGGCATTGCTGGGCAGGACCTAAATGAAGGGAATTCAACA
CTTACCCTGGCATTGGTATGGCAGCTGATGAGAAGGTACACATTGAATGTGTTATCGGATCTTGGAGAGG
GTGAAAAAGTAAATGATGAAATTATAATTAAATGGGTCAATCAGACTCTTAAAAGTGCAAACAAAAAGAC
TTCTATTTCCAGCTTCAAGGATAAATCTATAAGCACAAGTTTACCTGTCCTAGATTTAATAGATGCCATT
GCACCAAATGCAGTTCGTCAAGAAATGATCAGGAGAGAAAACTTATCTGATGAGGACAAGCTGAACAATG
CTAAATACGCCATTTCAGTTGCTCGAAAGATCGGTGCCCGGATATATGCATTACCTGATGACCTCGTAGA
AGTGAAACCAAAGATGGTTATGACGGTGTTTGCATGCTTAATGGGAAAAGGACTGAACAGAATAAAATAA

Translation (629 aa):
MENSTTTISREELEELQEAFNKIDIDNSGYVSDYELQDLFKEASLPLPGYKVREIVEKILSVADSNKDGK
ISFEEFVSLMQELKSKDISKTFRKIINKREGITAIGGTSTISSEGTQHSYSEEEKVAFVNWINKALENDP
DCKHLIPMNPNDDSLFKSLADGILLCKMINLSEPDTIDERAINKKKLTPFTISENLNLALNSASAIGCTV
VNIGASDLKEGKPHLVLGLLWQIIKVGLFADIEISRNEALIALLNEGEELEELMKLSPEELLLRWVNYHL
TNAGWHTISNFSQDIKDSRAYFHLLNQIAPKGGEDGPAIAIDLSGINETNDLKRAGLMLQEADKLGCKQF
VTPADVVSGNPKLNLAFVANLFNTYPCLHKPNNNDIDMNLLEGESKEERTFRNWMNSLGVNPYINHLYSD
LADALVIFQLYEMIRVPVNWSHVNKPPYPALGGNMKKIENCNYAVELGKNKAKFSLVGIAGQDLNEGNST
LTLALVWQLMRRYTLNVLSDLGEGEKVNDEIIIKWVNQTLKSANKKTSISSFKDKSISTSLPVLDLIDAI
APNAVRQEMIRRENLSDEDKLNNAKYAISVARKIGARIYALPDDLVEVKPKMVMTVFACLMGKGLNRIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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