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Report for CCDS31481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31481.1 Public Homo sapiens 11 PACSIN3 24 110 108 CCDS HistoryNCBI Gene:29763Re-query CCDS DB by CCDS ID:31481.1Re-query CCDS DB by GeneID:29763See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31481.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298838.11 ENSP00000298838.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298838.11Link to Ensembl Protein Viewer:ENSP00000298838.6Re-query CCDS DB by Nucleotide ID:ENST00000298838Re-query CCDS DB by Protein ID:ENSP00000298838
Original member Current member EBI ENST00000539589.5 ENSP00000440945.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539589.5Link to Ensembl Protein Viewer:ENSP00000440945.1Re-query CCDS DB by Nucleotide ID:ENST00000539589Re-query CCDS DB by Protein ID:ENSP00000440945
Original member Current member NCBI NM_001184974.2 NP_001171903.1 Accepted alive Link to Nucleotide Sequence:NM_001184974.2Link to Protein Sequence:NP_001171903.1Re-query CCDS DB by Nucleotide ID:NM_001184974Re-query CCDS DB by Protein ID:NP_001171903Link to BLAST:NP_001171903.1
Original member Current member NCBI NM_001184975.2 NP_001171904.1 Accepted alive Link to Nucleotide Sequence:NM_001184975.2Link to Protein Sequence:NP_001171904.1Re-query CCDS DB by Nucleotide ID:NM_001184975Re-query CCDS DB by Protein ID:NP_001171904Link to BLAST:NP_001171904.1
Original member Current member NCBI NM_016223.5 NP_057307.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016223.5Link to Protein Sequence:NP_057307.2Re-query CCDS DB by Nucleotide ID:NM_016223Re-query CCDS DB by Protein ID:NP_057307Link to BLAST:NP_057307.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171903.1 424 Q9UKS6 424 100% 0 0
NP_001171904.1 424 Q9UKS6 424 100% 0 0
NP_057307.2 424 Q9UKS6 424 100% 0 0

Chromosomal Locations for CCDS 31481.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 47177931 47178046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47178366 47178487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47178894 47179030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47179159 47179279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47179411 47179586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47180186 47180341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47180455 47180690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47182403 47182559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47182674 47182727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGCTCCAGAAGAGGACGCTGGAGGGGAGGCCTTAGGGGGCAGTTTCTGGGAGGCTGGCAACTACAGGC
GCACGGTACAGCGGGTGGAGGACGGGCACCGGCTGTGCGGGGACCTGGTCAGCTGCTTCCAGGAGCGCGC
CCGCATCGAGAAGGCTTATGCCCAGCAGTTGGCTGACTGGGCCCGAAAGTGGAGGGGGACCGTGGAGAAG
GGCCCCCAGTATGGCACACTGGAGAAGGCCTGGCATGCCTTTTTCACGGCGGCTGAGCGGCTGAGCGCGC
TGCACCTGGAGGTGCGGGAGAAGCTGCAAGGGCAGGACAGTGAGCGGGTGCGCGCCTGGCAGCGGGGGGC
TTTCCACCGGCCTGTGCTGGGCGGCTTCCGCGAGAGCCGGGCGGCCGAGGACGGCTTCCGCAAGGCCCAG
AAGCCCTGGCTGAAGAGGCTGAAGGAGGTTGAGGCTTCCAAGAAAAGCTACCACGCAGCCCGGAAGGATG
AGAAGACCGCCCAGACGAGGGAGAGCCACGCAAAGGCAGACAGCGCCGTCTCCCAGGAGCAGCTGCGCAA
ACTGCAGGAACGGGTGGAACGCTGTGCCAAGGAGGCCGAGAAGACAAAAGCTCAGTATGAGCAGACGCTG
GCAGAGCTGCATCGCTACACTCCACGCTACATGGAGGACATGGAACAGGCCTTTGAGACCTGCCAGGCCG
CCGAGCGCCAGCGGCTTCTTTTCTTCAAGGATATGCTGCTCACCTTACACCAGCACCTGGACCTTTCCAG
CAGTGAGAAGTTCCATGAACTCCACCGTGACTTGCACCAGGGCATTGAGGCAGCCAGTGACGAAGAGGAT
CTGCGCTGGTGGCGCAGCACCCACGGGCCAGGCATGGCCATGAACTGGCCACAGTTCGAGGAGTGGTCCT
TGGACACACAGAGGACAATCAGCCGGAAAGAGAAGGGTGGCCGGAGCCCTGATGAGGTTACCCTGACCAG
CATTGTGCCTACAAGAGATGGCACCGCACCCCCACCCCAGTCCCCGGGGTCCCCAGGCACGGGGCAGGAT
GAGGAGTGGTCAGATGAAGAGAGTCCCCGGAAGGCTGCCACCGGGGTTCGGGTGAGGGCACTCTATGACT
ACGCTGGCCAGGAAGCTGATGAGCTGAGCTTCCGAGCAGGGGAGGAGCTGCTGAAGATGAGTGAGGAGGA
CGAGCAGGGCTGGTGCCAAGGCCAGTTGCAGAGTGGCCGCATTGGCCTGTACCCTGCCAACTACGTGGAG
TGTGTGGGCGCCTGA

Translation (424 aa):
MAPEEDAGGEALGGSFWEAGNYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGTVEK
GPQYGTLEKAWHAFFTAAERLSALHLEVREKLQGQDSERVRAWQRGAFHRPVLGGFRESRAAEDGFRKAQ
KPWLKRLKEVEASKKSYHAARKDEKTAQTRESHAKADSAVSQEQLRKLQERVERCAKEAEKTKAQYEQTL
AELHRYTPRYMEDMEQAFETCQAAERQRLLFFKDMLLTLHQHLDLSSSEKFHELHRDLHQGIEAASDEED
LRWWRSTHGPGMAMNWPQFEEWSLDTQRTISRKEKGGRSPDEVTLTSIVPTRDGTAPPPQSPGSPGTGQD
EEWSDEESPRKAATGVRVRALYDYAGQEADELSFRAGEELLKMSEEDEQGWCQGQLQSGRIGLYPANYVE
CVGA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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