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Report for CCDS8751.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8751.1 Public Homo sapiens 12 AMIGO2 24 110 108 CCDS HistoryNCBI Gene:347902Re-query CCDS DB by CCDS ID:8751.1Re-query CCDS DB by GeneID:347902See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8751.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266581.4 ENSP00000266581.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000266581.4Link to Ensembl Protein Viewer:ENSP00000266581.4Re-query CCDS DB by Nucleotide ID:ENST00000266581Re-query CCDS DB by Protein ID:ENSP00000266581
Original member Current member EBI ENST00000429635.1 ENSP00000406020.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429635.1Link to Ensembl Protein Viewer:ENSP00000406020.1Re-query CCDS DB by Nucleotide ID:ENST00000429635Re-query CCDS DB by Protein ID:ENSP00000406020
Original member Current member EBI ENST00000550413.2 ENSP00000449034.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000550413.2Link to Ensembl Protein Viewer:ENSP00000449034.1Re-query CCDS DB by Nucleotide ID:ENST00000550413Re-query CCDS DB by Protein ID:ENSP00000449034
Original member Current member NCBI NM_001143668.1 NP_001137140.1 Accepted alive Link to Nucleotide Sequence:NM_001143668.1Link to Protein Sequence:NP_001137140.1Re-query CCDS DB by Nucleotide ID:NM_001143668Re-query CCDS DB by Protein ID:NP_001137140Link to BLAST:NP_001137140.1
Original member Current member NCBI NM_001370299.1 NP_001357228.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370299.1Link to Protein Sequence:NP_001357228.1Re-query CCDS DB by Nucleotide ID:NM_001370299Re-query CCDS DB by Protein ID:NP_001357228Link to BLAST:NP_001357228.1
Original member Current member NCBI NM_181847.4 NP_862830.1 Accepted alive Link to Nucleotide Sequence:NM_181847.4Link to Protein Sequence:NP_862830.1Re-query CCDS DB by Nucleotide ID:NM_181847Re-query CCDS DB by Protein ID:NP_862830Link to BLAST:NP_862830.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137140.1 522 Q86SJ2 522 100% 0 0
NP_001357228.1 522 Q86SJ2 522 100% 0 0
NP_862830.1 522 Q86SJ2 522 100% 0 0

Chromosomal Locations for CCDS 8751.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 47077434 47079002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGTCGTTACGTGTACACACTCTGCCCACCCTGCTTGGAGCCGTCGTCAGACCGGGCTGCAGGGAGCTGC
TGTGTTTGCTGATGATCACAGTGACTGTGGGCCCTGGTGCCTCTGGGGTGTGCCCCACCGCTTGCATCTG
TGCCACTGACATCGTCAGCTGCACCAACAAAAACCTGTCCAAGGTGCCTGGGAACCTTTTCAGACTGATT
AAGAGACTGGACCTGAGTTATAACAGAATTGGGCTTCTGGATTCTGAGTGGATTCCAGTATCGTTTGCAA
AGCTGAACACCCTAATTCTTCGTCATAACAACATCACCAGCATTTCCACGGGCAGTTTTTCCACAACTCC
AAATTTGAAGTGTCTTGACTTATCGTCCAATAAGCTGAAGACGGTGAAAAATGCTGTATTCCAAGAGTTG
AAGGTTCTGGAAGTGCTTCTGCTTTACAACAATCACATATCCTATCTCGATCCTTCAGCGTTTGGAGGGC
TCTCCCAGTTGCAGAAACTCTACTTAAGTGGAAATTTTCTCACACAGTTTCCGATGGATTTGTATGTTGG
AAGGTTCAAGCTGGCAGAACTGATGTTTTTAGATGTTTCTTATAACCGAATTCCTTCCATGCCAATGCAC
CACATAAATTTAGTGCCAGGAAAACAGCTGAGAGGCATCTACCTTCATGGAAACCCATTTGTCTGTGACT
GTTCCCTGTACTCCTTGCTGGTCTTTTGGTATCGTAGGCACTTTAGCTCAGTGATGGATTTTAAGAACGA
TTACACCTGTCGCCTGTGGTCTGACTCCAGGCACTCGCGTCAGGTACTTCTGCTCCAGGATAGCTTTATG
AATTGCTCTGACAGCATCATCAATGGTTCCTTTCGTGCGCTTGGCTTTATTCATGAGGCTCAGGTCGGGG
AAAGACTGATGGTCCACTGTGACAGCAAGACAGGTAATGCAAATACGGATTTCATCTGGGTGGGTCCAGA
TAACAGACTGCTAGAGCCGGATAAAGAGATGGAAAACTTTTACGTGTTTCACAATGGAAGTCTGGTTATA
GAAAGCCCTCGTTTTGAGGATGCTGGAGTGTATTCTTGTATCGCAATGAATAAGCAACGCCTGTTAAATG
AAACTGTGGACGTCACAATAAATGTGAGCAATTTCACTGTAAGCAGATCCCATGCTCATGAGGCATTTAA
CACAGCTTTTACCACTCTTGCTGCTTGCGTGGCCAGTATCGTTTTGGTACTTTTGTACCTCTATCTGACT
CCATGCCCCTGCAAGTGTAAAACCAAGAGACAGAAAAATATGCTACACCAAAGCAATGCCCATTCATCGA
TTCTCAGTCCTGGCCCCGCTAGTGATGCCTCCGCTGATGAACGGAAGGCAGGTGCAGGTAAAAGAGTGGT
GTTTTTGGAACCCCTGAAGGATACTGCAGCAGGGCAGAACGGGAAAGTCAGGCTCTTTCCCAGCGAGGCA
GTGATAGCTGAGGGCATCCTAAAGTCCACGAGGGGGAAATCTGACTCAGATTCAGTCAATTCAGTGTTTT
CTGACACACCTTTTGTGGCGTCCACTTAA

Translation (522 aa):
MSLRVHTLPTLLGAVVRPGCRELLCLLMITVTVGPGASGVCPTACICATDIVSCTNKNLSKVPGNLFRLI
KRLDLSYNRIGLLDSEWIPVSFAKLNTLILRHNNITSISTGSFSTTPNLKCLDLSSNKLKTVKNAVFQEL
KVLEVLLLYNNHISYLDPSAFGGLSQLQKLYLSGNFLTQFPMDLYVGRFKLAELMFLDVSYNRIPSMPMH
HINLVPGKQLRGIYLHGNPFVCDCSLYSLLVFWYRRHFSSVMDFKNDYTCRLWSDSRHSRQVLLLQDSFM
NCSDSIINGSFRALGFIHEAQVGERLMVHCDSKTGNANTDFIWVGPDNRLLEPDKEMENFYVFHNGSLVI
ESPRFEDAGVYSCIAMNKQRLLNETVDVTINVSNFTVSRSHAHEAFNTAFTTLAACVASIVLVLLYLYLT
PCPCKCKTKRQKNMLHQSNAHSSILSPGPASDASADERKAGAGKRVVFLEPLKDTAAGQNGKVRLFPSEA
VIAEGILKSTRGKSDSDSVNSVFSDTPFVAST


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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