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Report for CCDS44889.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
44889.1 |
Public |
Homo sapiens |
12 |
SMAGP |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:57228](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:44889.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:57228](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 44889.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000398453.7 |
ENSP00000381471.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000398453.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000381471.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000398453](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000381471](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000603864.5 |
ENSP00000474892.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000603864.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000474892.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000603864](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000474892](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000603798.6 |
ENSP00000475068.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000603798.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000475068.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000603798](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000475068](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001031628.2 |
NP_001026798.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001031628.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001026798.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001031628](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001026798](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001026798.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001033873.1 |
NP_001029045.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001033873.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001029045.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001033873](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001029045](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001029045.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 44889.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (294 nt): ATGACCAGCCTCCTGACTACTCCTTCTCCAAGAGAAGAACTGATGACCACCCCAATTTTACAGCCCACTG AGGCCCTGTCCCCAGAAGATGGAGCCAGCACAGCACTCATTGCAGTTGTTATCACCGTTGTCTTCCTCAC CCTGCTCTCGGTCGTGATCTTGATCTTCTTTTACCTGTACAAGAACAAAGGCAGCTACGTCACCTATGAA CCTACAGAAGGTGAGCCCAGTGCCATCGTCCAGATGGAGAGTGACTTGGCCAAGGGCAGCGAGAAAGAGG AATATTTCATCTAA
Translation (97 aa): MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYE PTEGEPSAIVQMESDLAKGSEKEEYFI
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